Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pumo5g03193 | ATGGCGATGAAGAAGTTGCCGTTGCTGAAAGTGAAACCATCACCAAAACCACCTTCTTCTGCGATCCCCAACCTCCCTCTCCCCTCACCACCACCAGACACATCCGTGTCCCCCGTTCACTACGCCCGCTTCCTGGACTTCCTCAAAGCCCATTGGGCCCCACCGTTCAGCCCGGACACCCTCCTCCACTTCTTCAAATCGAAGCTCCACCACCACCCCTCCTTCTCCCAATTCGACTTCCACCTCTTCACGTGGGCCTTCTCCCTCGACTCCTTCCGCCACACCCACGCCACCTTCCACTGGATGGCCCGCACCCTCTCCGCCACCCACCGCCTCGCCCAGCTCCGCACCCTCCTCCACCTCATCGCCGCCAACCCCTGCCCCTGCTCCCCCTCCATCTTCTCCTGCCCCCAAACCGAACCCATCTTCTCCCACGCCATCCACGCCTTCTCCAAAGCCTCCAAACTCCATGACGCCGTTTCCGCATTCCACTCCATGGTTAAATTAATCGACGGCAAGCCAAACGTCGCCGTTTGCAACATCCTCATTCACGCCTTCGTCAAACGCGGTAGCCACAATACCGCTCTCGAGTTTTACCGCGAGATGGTGGTAAAACATAGGGTTAAGCCTGATGTTTTTACTTTTAACATTTTGATCAGTGGTTATTGTCGGAACTCGCAGTTTGAGTTGGCGTTGGAGATGTTTCACGAGATGGGGAAAATGGGGTGTGAGCCCAATGTGGTTACTTTTAATACGTTGATTAAGGGGATGTTCAGAGAGGGGAAGGTTGAGGAAGCGATTGGGATGGCTCGCGAGATGGTTCAATTGGGGATCCAATTTTCGAGTGTTACTTGTGAGATTTTGGTTCAAGGGCTTTGTAAGGAAGAGAGGGTTTTGCAGGCGTGTGAGTTGTTGCTGGAGTTTTGTGAGAAGGGGGTTTTGCCGGAAGGGTTTGATTGTTTTGCGTTGGTGGAGGTTTTGTGTGGGGAAGGGTATGTTATGAGAGCGTTGGAGGTTGTTTATGAGTTGTGGAATGGGGGAAGTGTTCCGAGTTTGGTTGCTTGTATTGTCATGGTTGATGGGTTGAGGGGATTGGGGAAGATTGAAGAGGCAAGGAGATTGGTGGAAAGGATGCTTGAAGAGGGTATGGTGCTGGATGTTGTGACTTTCAATTCTGTTCTCCGAGATATTTGTGATGCGCGGAGAACGGATGAGGCGAATAGATTGAGGTTGCTTGCTTCTAGCAAGGGTTTGGAACCGGATGACATGACGTATAGGATTTTGGTTATGGGGTATATGGGAGAGGGGGGGAGAGAGCAAGGAGAGTTGCTGGTGAATGAAATGTTGGATAGGGGGTTTATACCTGATCTTGCTTCATATAATAAATTGATGAGTGGATTATCGAATTGCCGGCACTCTATGTGCCATCAAGTAAACAAATTTGATCGTTGA | 1452 | 0.5117 | MAMKKLPLLKVKPSPKPPSSAIPNLPLPSPPPDTSVSPVHYARFLDFLKAHWAPPFSPDTLLHFFKSKLHHHPSFSQFDFHLFTWAFSLDSFRHTHATFHWMARTLSATHRLAQLRTLLHLIAANPCPCSPSIFSCPQTEPIFSHAIHAFSKASKLHDAVSAFHSMVKLIDGKPNVAVCNILIHAFVKRGSHNTALEFYREMVVKHRVKPDVFTFNILISGYCRNSQFELALEMFHEMGKMGCEPNVVTFNTLIKGMFREGKVEEAIGMAREMVQLGIQFSSVTCEILVQGLCKEERVLQACELLLEFCEKGVLPEGFDCFALVEVLCGEGYVMRALEVVYELWNGGSVPSLVACIVMVDGLRGLGKIEEARRLVERMLEEGMVLDVVTFNSVLRDICDARRTDEANRLRLLASSKGLEPDDMTYRILVMGYMGEGGREQGELLVNEMLDRGFIPDLASYNKLMSGLSNCRHSMCHQVNKFDR | 483 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 351 | 385 | IPR002885 | - | |
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 386 | 420 | IPR002885 | - | |
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 421 | 455 | IPR002885 | - | |
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 246 | 280 | IPR002885 | - | |
| Pumo5g03193 | 483 | Pfam | PPR repeat family | 210 | 257 | IPR002885 | - | |
| Pumo5g03193 | 483 | SUPERFAMILY | HCP-like | 145 | 309 | - | - | |
| Pumo5g03193 | 483 | PANTHER | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 | 349 | 471 | - | - | |
| Pumo5g03193 | 483 | Gene3D | Tetratricopeptide repeat domain | 76 | 204 | IPR011990 | GO:0005515 | |
| Pumo5g03193 | 483 | Gene3D | Tetratricopeptide repeat domain | 300 | 412 | IPR011990 | GO:0005515 | |
| Pumo5g03193 | 483 | MobiDBLite | consensus disorder prediction | 11 | 30 | - | - | |
| Pumo5g03193 | 483 | Gene3D | Tetratricopeptide repeat domain | 413 | 478 | IPR011990 | GO:0005515 | |
| Pumo5g03193 | 483 | Gene3D | Tetratricopeptide repeat domain | 205 | 299 | IPR011990 | GO:0005515 | |
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 281 | 315 | IPR002885 | - | |
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 175 | 210 | IPR002885 | - | |
| Pumo5g03193 | 483 | Pfam | PPR repeat | 178 | 204 | IPR002885 | - | |
| Pumo5g03193 | 483 | Pfam | PPR repeat | 357 | 382 | IPR002885 | - | |
| Pumo5g03193 | 483 | Pfam | PPR repeat | 283 | 313 | IPR002885 | - | |
| Pumo5g03193 | 483 | Pfam | PPR repeat | 143 | 168 | IPR002885 | - | |
| Pumo5g03193 | 483 | NCBIfam | pentatricopeptide repeat | 355 | 387 | IPR002885 | - | |
| Pumo5g03193 | 483 | NCBIfam | pentatricopeptide repeat | 178 | 212 | IPR002885 | - | |
| Pumo5g03193 | 483 | NCBIfam | pentatricopeptide repeat | 283 | 315 | IPR002885 | - | |
| Pumo5g03193 | 483 | NCBIfam | pentatricopeptide repeat | 248 | 279 | IPR002885 | - | |
| Pumo5g03193 | 483 | NCBIfam | pentatricopeptide repeat | 213 | 247 | IPR002885 | - | |
| Pumo5g03193 | 483 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 211 | 245 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pumo5g03193 | 143 | 481 | Glycosyltransferase | AT1G05670 | 24.854 | 4.17e-32 | 128 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pumo5g03193 | - | - | gmx:100796880 | 797.349 |