Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03139 ATGGCGGAGCACTTGGCATCGATATTCGGGACGGAGAAGGACAGGGTGAACTGCCCGTTCTACTTCAAGATCGGCGCGTGCAGGCACGGCGACCGGTGTTCTCGGCTTCACACGAAGCCCACAATTAGCCCAACGTTGGTGCTGTCGAACATGTACCAGAGGCCCGACATGAACATGAACATCATCACCAACCCTAATCAGCCCCAACCTCAATCCCTCGACCCCGACAAGGTCCAGAATCACTTCGACGACTTCTACGAAGATCTCTTCGAGGAGCTCAGCAAGTACGGCCCAATTCAGAGCTTGAATATTTGCGACAATCTCGCCGATCACATGGTTGGAAATGTGTATGTTCAGTTTAGGGAGGAAGATCATGCTGCCAACGCCCTCATGAATCTCACTGGGAGATTTTATTCAGGTCGACCCATCATTGTTGACTTCTCTCCTGTGACGGATTTTCGAGAAGCTACTTGTAGGCAGTATGAGGAAAATGTATGCAATCGTGGTGGCTACTGCAACTTTATGCATCTGAAGAAGATTAGCAGGGATTTACGAAGGAAATTATTTGGAAGAAATAGGCGATGGAATGGAAGCAGAAGCAGGAGCCCTCCAAGGAATCGTGGCCATGGGGAGCATTCACATTCTGGTCGTGGTTCTGGTAGAAGAGATTTTGACAGGTCCCATGGCCACCATGGTAGGAGGCCTAGAAGCCGTAGTCCTCGATATAGAGGAAAACGAAGTAGAAGTCCACTGGGTGGCAGGGATAGGAGTCCGGTCAGAGAAAGTAGTGCAGAAAGGAGAGCTAAAATAGAGCAATGGAACAGAGAGAAGGAACTAGGGGACGCTGGTAACAAGAACGATACGAAAAGCAATGATTATCAAGAACAGAGTGTTGCACAAAATGGCAGTGAATCTGATAACCATCAGATATAG 933 0.4877 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHTKPTISPTLVLSNMYQRPDMNMNIITNPNQPQPQSLDPDKVQNHFDDFYEDLFEELSKYGPIQSLNICDNLADHMVGNVYVQFREEDHAANALMNLTGRFYSGRPIIVDFSPVTDFREATCRQYEENVCNRGGYCNFMHLKKISRDLRRKLFGRNRRWNGSRSRSPPRNRGHGEHSHSGRGSGRRDFDRSHGHHGRRPRSRSPRYRGKRSRSPLGGRDRSPVRESSAERRAKIEQWNREKELGDAGNKNDTKSNDYQEQSVAQNGSESDNHQI 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03139 310 MobiDBLite consensus disorder prediction 248 285 - -
Pumo5g03139 310 ProSiteProfiles Zinc finger C3H1-type profile. 152 179 IPR000571 GO:0046872
Pumo5g03139 310 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Pumo5g03139 310 MobiDBLite consensus disorder prediction 286 310 - -
Pumo5g03139 310 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 PRINTS U2 auxiliary factor small subunit signature 169 181 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 PRINTS U2 auxiliary factor small subunit signature 134 158 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 PRINTS U2 auxiliary factor small subunit signature 107 129 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 PRINTS U2 auxiliary factor small subunit signature 79 94 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 SMART rrm1_1 78 146 IPR000504 GO:0003723
Pumo5g03139 310 SUPERFAMILY RNA-binding domain, RBD 81 153 IPR035979 GO:0003676
Pumo5g03139 310 Gene3D - 43 149 IPR012677 -
Pumo5g03139 310 MobiDBLite consensus disorder prediction 227 247 - -
Pumo5g03139 310 CDD RRM_U2AF35B 44 149 - -
Pumo5g03139 310 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 150 IPR000504 GO:0003723
Pumo5g03139 310 MobiDBLite consensus disorder prediction 194 310 - -
Pumo5g03139 310 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Pumo5g03139 310 SMART c3hfinal6 152 178 IPR000571 GO:0046872
Pumo5g03139 310 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 283 IPR009145 GO:0000398|GO:0003723|GO:0089701
Pumo5g03139 310 SMART rrm2_1 71 146 IPR003954 GO:0003676
Pumo5g03139 310 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 143 IPR000504 GO:0003723
Pumo5g03139 310 MobiDBLite consensus disorder prediction 204 226 - -
Pumo5g03139 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 154 177 IPR000571 GO:0046872
Pumo5g03139 310 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 37 IPR000571 GO:0046872
Pumo5g03139 310 FunFam Splicing factor U2AF small subunit 45 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03139 Pumo-Chr5 80153904 80156603 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03139 K12836 - gmx:100783847 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03139 5 80153904 80156603 Pumo5g03139 5 80153904 80156603 ECH