Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03121 ATGGATAGTGCAAATTGCAGTTGCAATAGATGGCAGCCAGGCCTCCACTGCAAATCCTTCAACTCTTCCCTTTCACTTTCTCTTTCTCTTTCTCTTTCTCCTCCTTACTCCAAACCACCTTCCTCCCTCTCCTTCCGCCACAAACCCTCCACTCTCCGCCATGCCACTCCCGAAACCCACGCGCTTCTCCACGTGCTCCACGTGTCCTCTCGTTCTGGTGACACACACCTCGCCAAGACCGTCCACGCCACGCTCCTCAAATGCGACCACCAAGACACCCACCTCTCCAACGCTCTCATCTCCACTTACCTCAAACTCGACCTCTTCTCCCACGCGCTGCGCGTCTTCCTCTCCCTCCTTTTCCCCAACGTCGTCTCTTACACCACCCTCATTTCCTTCCTCTCCAAGCACCGCGAGCGCCACGCACTCCATCTCTTCCTCCGCATGACGCGCTCCCACGTCCTCCCTAACGAGTACACATACGTCGCCGTTTTAACCGCATGCGCAAGACTCCTCCACTTTCAATTGGGCCTCCAGGTCCACGCCGCCGCGCTCAAAACGGCCCATTTCGACTCCCCCTTCGTCGCAAACGCCCTCGTCTCGCTCTACGCCAAGTACGCCTCCTTCCACGTTGCGCTTAAACTGTTTAACCAGATACGACACAGGGACATTGCGTCGTGGAACACTATTATCTCCGCTGCGGTGCAGGAGTCTTTATACGACACCGCGTTTCGCTTGTTCCGTAACATGCAGGCCACGGATGCGTTTAGAGTCGATGATTTCACTTTATCCATACTTTTGACCGCGTCTGCGTCGTTGATGGAAGGTCAACAAGTTCACGCGCATGCTGTTAAATTAGGGTTCGAAACTGATTTGAACGTTGGGAATGGACTCATTGGGTTTTACACTAAATTTGGAACTGTTGATGATGTGGAGTGGTTGTTTGAGGGGATGAGAGTGAGGGATGTTATAACTTGGACTGAGATGGTAACCGCGTATATGGAATTTGGGTTAGTGGATTTGGCCTTGAAGGTGTTCGATGAAATGCCGGAGAAGAATTCGGTGTCTTATAACACGGTTTTATCTGGGTTTTGTCGAAATGAGGAAGGTTTAGAGGCGATGAAGTTGTTTGTCAGAATGGTGGAGGAGGGTTTGGAGTTGACGGATTTTAGTTTGACTAGTGTTGTTGATGCTTGTGGATTGCTTGGTGATTACAGGGTCAGCAAGCAGATTCATGGGTTTGCAGTGAAGTTTGGGTTTGGATCGAATGGTTATGTTGAAGCTGCGTTGCTTGACATGTACACAAGGTGTGGGAGGATGGTGGATGCTGAGAAGATGTTTTTGAGATGGGAGTTGGAGGAATTTAGCTCTGTGGTTTGGACAGCCATGATATGTGGCTATGCTCGGAATGGGCAACCGGAGGAGGCGATTTCTCTTTTCCATGTTGGTCAATTGGATGGGAAGGTGATTATGGATGAAGTTGCAGCAGCTTCGATGCTTGGTCTTTGTGGAACTGTTGGCCATCTTGATTTGGGTAAGCAAATCCACTGCCATGTTGTTAAATGTGGCTTGGGATGTAATTTGGAAGTTGGAAATGCAGTTGTTAGCATGTATTTTAAGTGTGGGAGTGTGGATGATGCAATGAAGGTGTTTAATGATATGCCTTGTACTGATATAGTTACATGGAATACTTTGATTTCTGGCAATCTTATGCACAGACAGGGGGATAGAGCATTGGAAATATGGGTGGAAATGCAGGAGGAGGGCATAAAGCCTAACCAAGTTACATTTGTTTTGATAATTTCAGCTTACAGGCAAACTAACTCAAATTTGGTTGATGATTGTCGTAGTTTGTTTAATTCAATGAGAACTGTTTATCAAATTGAGCCCACATCCAAGCATTATGCTTCCTTCATCAGTGTTTTGGGTCACTGGGGTCTTCTGCAAGAAGCACTAGAAACTATCAATAACATGCCTTTCCAGCCTTCTGCTCTTGTTTGGCGCGCTTTGCTTGATGGTTGTAGATTGCATAAGAATGCATTGATTGGAAAATGGGCTACTCAGAATATTCTGTCCCTAGAACCTAAAGATCCTTCAACGTTTATACTTGTTTCAAATTTGTATTCTGCTTCTGGGAGATGGGACCGCTCTGAAATGGTAAGGGAGGATATGAGAGAAAAGGGGTTTCGCAAACACCCAGCTCAAAGTTGGATCGTTTGTGAGAAGAAAATACATACATTTTATCCGAGAGATAGATCACATCCACAGGAGAAAGACATACAGAGAGGTTTGGAAATTCTGATCTTGGAGTGCCTAAAAATTGGATATGAACCTGACACGAGCTTTGTTCTCCATGAAGTAGAGGAGCATCACAAGAAAATTTTTCTATTCCATCACAGTGCTAAATTGGCAGCAACTTATGGGATACTGATGACCAAGCCTGGAAAGCCCGTTAGGATTGTAAAGAACATCCTTCTTTGTGGGGACTGCCATGCATTCTTAAAATATGCATCTATTGTCACAAAGAGGGATATATTTCTGAGAGATTCTTCTGGATTTCATTGTTTCTCCAATGGCCAGTGCTCGTGTAAAGACTGCTGGTGA 2604 0.4624 MDSANCSCNRWQPGLHCKSFNSSLSLSLSLSLSPPYSKPPSSLSFRHKPSTLRHATPETHALLHVLHVSSRSGDTHLAKTVHATLLKCDHQDTHLSNALISTYLKLDLFSHALRVFLSLLFPNVVSYTTLISFLSKHRERHALHLFLRMTRSHVLPNEYTYVAVLTACARLLHFQLGLQVHAAALKTAHFDSPFVANALVSLYAKYASFHVALKLFNQIRHRDIASWNTIISAAVQESLYDTAFRLFRNMQATDAFRVDDFTLSILLTASASLMEGQQVHAHAVKLGFETDLNVGNGLIGFYTKFGTVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVDLALKVFDEMPEKNSVSYNTVLSGFCRNEEGLEAMKLFVRMVEEGLELTDFSLTSVVDACGLLGDYRVSKQIHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAEKMFLRWELEEFSSVVWTAMICGYARNGQPEEAISLFHVGQLDGKVIMDEVAAASMLGLCGTVGHLDLGKQIHCHVVKCGLGCNLEVGNAVVSMYFKCGSVDDAMKVFNDMPCTDIVTWNTLISGNLMHRQGDRALEIWVEMQEEGIKPNQVTFVLIISAYRQTNSNLVDDCRSLFNSMRTVYQIEPTSKHYASFISVLGHWGLLQEALETINNMPFQPSALVWRALLDGCRLHKNALIGKWATQNILSLEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWIVCEKKIHTFYPRDRSHPQEKDIQRGLEILILECLKIGYEPDTSFVLHEVEEHHKKIFLFHHSAKLAATYGILMTKPGKPVRIVKNILLCGDCHAFLKYASIVTKRDIFLRDSSGFHCFSNGQCSCKDCW 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03121 867 Pfam E motif 677 738 IPR046848 -
Pumo5g03121 867 FunFam Pentatricopeptide repeat-containing protein103 511 608 - -
Pumo5g03121 867 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 178 277 - -
Pumo5g03121 867 Gene3D Tetratricopeptide repeat domain 277 407 IPR011990 GO:0005515
Pumo5g03121 867 FunFam Pentatricopeptide repeat-containing protein103 408 510 - -
Pumo5g03121 867 NCBIfam pentatricopeptide repeat 532 559 IPR002885 -
Pumo5g03121 867 NCBIfam pentatricopeptide repeat 355 388 IPR002885 -
Pumo5g03121 867 NCBIfam pentatricopeptide repeat 226 252 IPR002885 -
Pumo5g03121 867 NCBIfam pentatricopeptide repeat 458 481 IPR002885 -
Pumo5g03121 867 NCBIfam pentatricopeptide repeat 324 353 IPR002885 -
Pumo5g03121 867 NCBIfam pentatricopeptide repeat 560 593 IPR002885 -
Pumo5g03121 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 697 731 IPR002885 -
Pumo5g03121 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Pumo5g03121 867 Pfam PPR repeat 532 554 IPR002885 -
Pumo5g03121 867 Pfam PPR repeat 429 449 IPR002885 -
Pumo5g03121 867 Pfam PPR repeat 458 481 IPR002885 -
Pumo5g03121 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 456 490 IPR002885 -
Pumo5g03121 867 Gene3D Tetratricopeptide repeat domain 609 754 IPR011990 GO:0005515
Pumo5g03121 867 Gene3D Tetratricopeptide repeat domain 408 484 IPR011990 GO:0005515
Pumo5g03121 867 Gene3D Tetratricopeptide repeat domain 485 608 IPR011990 GO:0005515
Pumo5g03121 867 Gene3D Tetratricopeptide repeat domain 139 276 IPR011990 GO:0005515
Pumo5g03121 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 353 387 IPR002885 -
Pumo5g03121 867 FunFam Pentatricopeptide repeat-containing protein At5g03800 278 407 - -
Pumo5g03121 867 FunFam Pentatricopeptide repeat-containing protein103 609 759 - -
Pumo5g03121 867 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 322 352 IPR002885 -
Pumo5g03121 867 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 170 IPR046960 GO:0003723|GO:0009451
Pumo5g03121 867 Pfam DYW family of nucleic acid deaminases 775 867 IPR032867 GO:0008270
Pumo5g03121 867 Pfam PPR repeat family 558 604 IPR002885 -
Pumo5g03121 867 Pfam PPR repeat family 223 269 IPR002885 -
Pumo5g03121 867 Pfam PPR repeat family 122 170 IPR002885 -
Pumo5g03121 867 Pfam PPR repeat family 352 399 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03121 Pumo-Chr5 79978261 79981295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g03121 71 867 Glycoside Hydrolase AT3G49170 35.793 1.01e-155 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03121 - - gmx:100784704 1578.15