Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03120 ATGGACGCACCTCGTAAACAGCAGGTATCGTTGAGAGGAGCAAGTGCGAAGGAGATAACTCGAGACGCGCTTCTTCTTCAGGTCTCTCGGGAAAGAGAACTTCGCAATTACGCAAAAAGAGCTGCTGCTGCTGCTCTCTTCATTCAGAGAGTATGGAGGCGCTTCAAGGTCACAAAGATGATTTCTCTGCAGCTTCAGCTGGAGTGGGAGATAGTGGTGAATCATTATACTGGTGTGATGACAGCAAATTGGATTTCAAACAATTTGTTGAGACCATTTCTGTTCTTTATCACCCGTATCTCAACTCAGCATCAGAAGGTCCACAGCAAGAGAATAGATTCTATGAAGCTGTGCTTTACAATCCTACTGGAAAGCCTGAAATCTTCTGATTCAAAGCAGAACTTTTGCTTTCTGGCAATTGGTACAACTGAAGAAAGAAGAATATGGAGATACCAAGCACGACAGCTGACTTCTCTTAGTTTTTTCATTCTTTTGGAGTTTAGTGAACGCAATTCCTGGGCTCAAGATATTACTATTGTTACATCTCTAGCTATGCGTGTTCTTGTAATGTTAACTGATCTGAAAGGATGGAAAGGCATTACAGATGACAACCACTTAGATGCAGATTTAGCGGTGAAAGATTTAATTCAGTTCATGGGGGGTAATAAAAGTGGTTGTTATGTGTCCATTGGCAGATATATTTGTACATTAGAAAATCATTCCTCTCAGTCCAAGAGTATCACCCAGGCAGATGAAATTTTTTTCATTACTGCAAGTGCAATAACTTTAGCTGTGCGGCCATTTTATCTGACAAACTATGATGTAGAAGTGCCTGGCACGCTGGATGTCAACCATGCTGCTAAGCAGTATATTGTTTATCTTCTAACTATACCTTGGCTAGTGCAACATCTCCCACCTGTTCTTCTACCTGCTTTAAAGCACAAATCTATTTTGTTTCCATGCTTCCAGACTCTATTGATTTTGAAAGAGAAAGTTTTGATGGAGATGTCAGAGTTCGTCAAATCAGAGATACTTGTCTCTTTCAAGGCTATTCCACCAGTTGGTTGGGCCCTCACTAACAGTATATGCCTAGCAACAGGGAATGAGAGTGAATCCTTCGATCAAGGTTTAGACTATGCATTGTATGTTCGCGTCGTTATTACACTAGCAGAGGCCCTACTGGCTTGTCTTGATAATATTGGATGGGTCAAAAAGAAAAAGAAAGCCCTTCAAACTGATGTTGAAAGTTCAACACAGCCAATTGATACAGTTCAGCATGAGGGTGAAGCAACCAATGAATCCTTAATAATGTCATACATGGATCAATTTAGGCCTGTTTGTCAGCAGTGGCATCTCAAAAATCTTTTGGCATCAATAGATAGAGATGCCACTAACAAGGCTAAGACTGTGCTCTCAAATGGCCTGGCATGTCTGGGGAAGCTAGAATTGTGTGATGTTGCACTTTTTTATTCTAACTTACTTAGAATATTTTCAGTTTTGAGTCCAATTCGTGGCTCGTTATCAGTTCTCAACATGCTATCATTCACTCCTGGATTTCTTGTGAGATTGTGGGGTGCAGTGGAGGATTCCTTTTTTTCTGGAGACAAATATAATTCTGATAATCACACAAGTGAAAGCAGCAAACATAAAGCCTTTGAGAAGATGCAAAAACATGTCAGTAAAGACGGGGCTAATAAGTGGGTCAACGTACTTCATAAATTTACAGGTAAGTCACAAGCAGCAACAGATTGCACAGATTCCATTGGCAGTCACTCTGAGCCTAGCAGAGTGAATGATGATTCATCAGATGTATGGGACATAGAACCTATGAGGCATGGCCCACAAGGCGTTCCAAAGGATATGTTTGCTATGCTTCATCTTTTCTGTGCAACCTACTCTCACCTGCTTTTAGTTCTTGATGACATAGAGTTCTACGAGAAACAGGTTCCATTCAAAATAGAGCAGCAAAGAAGAATTGCATCAATGCTCAATACGCTGGTTTATAATGGCTTGTCCCATGTTAGTGGTCATCATAATAGGCCTCTCATGGATTGTGCTGTCAGATGCTTACATTTACTGTATGAAAGGGATTGCAGACATCCATTTTGTCCTCCTGCTTTGTGGCTTTCTCCTGCTAGAAAAAGCCGGCCACCAATTGCAGTTGCTGCCAGAACTCATGAAGTTTTAGCAGCCAACCTGAGATCTGATGATTCATCAGCTTCACTGAGTGTAGGTTCTGTTGTCACCATTGTTCCTCATGTTTTCCCTTTTGAGGAGAGAGTTGAGATGTTTCGTGAATTTATCAAGATGGATAAAGCATCCCGAAAAATGGCTGGTGAAATTTCTGAACCTGGTTCACGAGCCATTGAGATAGTAGTACGTCGGGGTCATATTGTTGAAGATGGATTTCGGCAATTAAATTCACTTGGGTCAAAGTTGAAGTCATCCATCCATGTATCATTTGTCAGTGAATGTGGTCTTCTTGAGGCTGGCCTGGACTATGGTGGATTATCTAAAGAGTTTCTGACTGATATATCAAAAGCAGCATTTGCTCCTGAATATGGACTCTTTTCCCAAACCTCAACTTCAGACAGGCTTCTAATTCCAACTACATCTGCTAGATATTTGGAGAATGGTCTTCAGATGATTGAGTTCCTTGGAAGAGTAGTGGGTAAAGCTCTATATGAAGGAATATTACTTGATTACTCTTTCTCCCATGTTTTTGTACAAAAGCTATTGGGACGATATAGCTTTCTTGATGAATTATCAACACTTGATCCAGAGCTATACAGGAATCTTATGTATGTCAAGAATTATGATGGTGATGTCATGGAGCTCTCTCTTGATTTCACAGTTACTGAAGAATCATTGGGCAAAAGGTATGTGATTGAACTTAAGTCTGGTGGCAAAGACATTTCTGTGACAAATGAGAACAAGATGCAGTACATACATGCAATGGCAGACTACAAACTCAACCAACAGGTTTTAGTATCATTTGCTGTTGTATAA 3009 0.4055 MDAPRKQQVSLRGASAKEITRDALLLQVSRERELRNYAKRAAAAALFIQRVWRRFKVTKMISLQLQLEWEIVVNHYTGVMTANWISNNLLRPFLFFITRISTQHQKVHSKRIDSMKLCFTILLESLKSSDSKQNFCFLAIGTTEERRIWRYQARQLTSLSFFILLEFSERNSWAQDITIVTSLAMRVLVMLTDLKGWKGITDDNHLDADLAVKDLIQFMGGNKSGCYVSIGRYICTLENHSSQSKSITQADEIFFITASAITLAVRPFYLTNYDVEVPGTLDVNHAAKQYIVYLLTIPWLVQHLPPVLLPALKHKSILFPCFQTLLILKEKVLMEMSEFVKSEILVSFKAIPPVGWALTNSICLATGNESESFDQGLDYALYVRVVITLAEALLACLDNIGWVKKKKKALQTDVESSTQPIDTVQHEGEATNESLIMSYMDQFRPVCQQWHLKNLLASIDRDATNKAKTVLSNGLACLGKLELCDVALFYSNLLRIFSVLSPIRGSLSVLNMLSFTPGFLVRLWGAVEDSFFSGDKYNSDNHTSESSKHKAFEKMQKHVSKDGANKWVNVLHKFTGKSQAATDCTDSIGSHSEPSRVNDDSSDVWDIEPMRHGPQGVPKDMFAMLHLFCATYSHLLLVLDDIEFYEKQVPFKIEQQRRIASMLNTLVYNGLSHVSGHHNRPLMDCAVRCLHLLYERDCRHPFCPPALWLSPARKSRPPIAVAARTHEVLAANLRSDDSSASLSVGSVVTIVPHVFPFEERVEMFREFIKMDKASRKMAGEISEPGSRAIEIVVRRGHIVEDGFRQLNSLGSKLKSSIHVSFVSECGLLEAGLDYGGLSKEFLTDISKAAFAPEYGLFSQTSTSDRLLIPTTSARYLENGLQMIEFLGRVVGKALYEGILLDYSFSHVFVQKLLGRYSFLDELSTLDPELYRNLMYVKNYDGDVMELSLDFTVTEESLGKRYVIELKSGGKDISVTNENKMQYIHAMADYKLNQQVLVSFAVV 1002
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03120 1002 ProSiteProfiles HECT domain profile. 813 1002 IPR000569 GO:0004842
Pumo5g03120 1002 FunFam Putative Ubiquitin-protein ligase E3C 915 994 - -
Pumo5g03120 1002 SUPERFAMILY Hect, E3 ligase catalytic domain 789 996 IPR035983 GO:0004842
Pumo5g03120 1002 Gene3D Hect, E3 ligase catalytic domain 915 994 - -
Pumo5g03120 1002 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 6 995 IPR044611 GO:0000209|GO:0061630
Pumo5g03120 1002 Gene3D Hect, E3 ligase catalytic domains 791 996 - -
Pumo5g03120 1002 SMART hect_3 807 1002 IPR000569 GO:0004842
Pumo5g03120 1002 MobiDBLite consensus disorder prediction 585 604 - -
Pumo5g03120 1002 Pfam HECT-domain (ubiquitin-transferase) 844 996 IPR000569 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03120 Pumo-Chr5 79970178 79977507 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03120 K10588 - gmx:100527169 1865.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03120 5 79970178 79977507 Pumo5g03120 5 79970178 79977507 ECH