Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03117 ATGGGGAGGAGTAGTGCAAGAGACCGAAGGCGAAGAAGATCAGATGAGTCCGAATCCGAGTCACCTTCCGATTCCGACTCCGACAGACGCCACCGTAGCAGTAGCCGCCGGTCACGGCGGGACTCTGACGGCGATAGGAGGAAGAAGTCCTCGAAGTCTGAATCCGAGTCACCTTCGGATTCCGACTCCGACAGACGCCACCGTAGCAGCAGCCGCCGGTCACGGCGGGACTCTGACGGTGACAGGAAGAAGAAGTCCTCGAGGAACATCACAGAAGAGGAAATTGCGCAGTACATGGCCAAAAAGGCCCAATCAAAGGCAATGAAAGTCGCGAAAAAGTTGAAAACCAGCACGGTGTCGGGCTATTCCAACGATTCGAATCCGTTTGGTGACTCTAATCTCAACGAGAAGTTTGTTTGGCGCAAGAAGATTGAGCGTGATGTTACTCAAGGTGTGTCTATTGATACGTTTTCAGTTAAGGCCGAGAAAAAGAGACAGAGAGAAAGGATGGCAGAAATTGAAAAAGTGAAAAAGAGAAGAGAGGAAAGGGCACTTGAGAAAGCACGACACGAGGAAGAAATGGCACTGTTAGCCAGAGAACGTGCTCGAGCTGAGTTTCAGGACTGGGAAAAAAAAGAAGAGGAGTTTCATTTTGATCAAAGCAAAGTTAGGTCAGAAATTAGATTGCGTGAAGGGCGTGCCAGACCAATCGATGTCCTAACCAAGCATCTCAATGGCTCTGATGATTTGGATATAGAAATAAATGAACCATACATGGTCTTCAAGGGTTTGACTGTGAACGAAATGAGTGAGCTACGTGACGACATCAAAATGCATCTGGACCTTGACAGGGCAACACCAACTCATGTAGAATATTGGGAGGCACTCCTTCTGGTGTGTGATTGGGAGCTAGCCGAAGCTCGAAAAAAGGATGCACTTGATCGAGCTAGGGTGCGTGGAGAAGAACCTCCTGCTGAGCTGCTTGCAGAAGAAAGGGGTTTGCATTCCAGTGTTGAGCCAGATGTGAAGAGGCTTTTGCAGGGGAAGACACATGCAGAGTTGGAGGCTTTGCGGGTTCACATTGAATCAGAAATGCGTACTGGTACAGCAAAGGTGGTTGAGTACTGGGAGGCCATTTTAAAACATCTCCACATTTACAAGGCCAAGGCTTGTTTAAAGGAAATTCATGCTAAATTGCTACGTAAGCATTTGCAATCTCTTGAGAGACCATTGGAGGATGAAGATAAATTGGAGCATGCTCATGTTATGATACCTGAGGAGGAAGGTACCGAGGATGATATTAAAGTCCGATCTGCAGATGAATCATTCTCACCAGAGCCCATTAGAGAGGAGGATCAAGAAGCTGATGACGAGGCTGGATCATTTTCACCACAACTGTTGCACGGTGATGAAAATGAGGAAGCTATTGACCCTGAAGAAGATAGAGCTATTCTGGAGCGGAATCGTAAGGCTGTATTAGAAGAGCAGCAAAGACGAGTTCAGGAAGCAATGGCATCAAAGCCAGCTCCTTCTGAAGATAATTTTGAGATGAAGGCCTTAAAAGCTATGGGGGATATGGAAGATGGAGATGCTGTGTTTGGTTCTGGTGCTGAAGTGAACCTGGATTCCCAGGTTTATTGGTGGCATGACAAATACAGGCCTAGGAAGCCGAAGTATTTCAACCGTGTTCACACAGGATATGAGTGGAACAAATATAATCAGACTCACTATGATCATGACAACCCACCTCCAAAGATTGTGCAAGGGTACAAATTTAATATTTTCTATCCTGATCTTGTAGACAAGACAAAAGCCCCAACCTACACCATTGAGAAGGATGGCAGCAATGGGGAGACTTGCATTATAAGATTCCATGCAGGGCCACCATATGAAGACATAGCTTTCCGCATCGTAAACAAAGAATGGGAATATTCTCATAAGAAAGGTTTTAAGTGCACATTTGAACGTGGAATTCTGCATGTGTACTTCAATTTCAAACGCCACCGCTACCGCAGATAA 2019 0.4616 MGRSSARDRRRRRSDESESESPSDSDSDRRHRSSSRRSRRDSDGDRRKKSSKSESESPSDSDSDRRHRSSSRRSRRDSDGDRKKKSSRNITEEEIAQYMAKKAQSKAMKVAKKLKTSTVSGYSNDSNPFGDSNLNEKFVWRKKIERDVTQGVSIDTFSVKAEKKRQRERMAEIEKVKKRREERALEKARHEEEMALLARERARAEFQDWEKKEEEFHFDQSKVRSEIRLREGRARPIDVLTKHLNGSDDLDIEINEPYMVFKGLTVNEMSELRDDIKMHLDLDRATPTHVEYWEALLLVCDWELAEARKKDALDRARVRGEEPPAELLAEERGLHSSVEPDVKRLLQGKTHAELEALRVHIESEMRTGTAKVVEYWEAILKHLHIYKAKACLKEIHAKLLRKHLQSLERPLEDEDKLEHAHVMIPEEEGTEDDIKVRSADESFSPEPIREEDQEADDEAGSFSPQLLHGDENEEAIDPEEDRAILERNRKAVLEEQQRRVQEAMASKPAPSEDNFEMKALKAMGDMEDGDAVFGSGAEVNLDSQVYWWHDKYRPRKPKYFNRVHTGYEWNKYNQTHYDHDNPPPKIVQGYKFNIFYPDLVDKTKAPTYTIEKDGSNGETCIIRFHAGPPYEDIAFRIVNKEWEYSHKKGFKCTFERGILHVYFNFKRHRYRR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03117 672 Pfam Conserved mid region of cactin 199 396 IPR018816 -
Pumo5g03117 672 MobiDBLite consensus disorder prediction 425 478 - -
Pumo5g03117 672 Coils Coil 163 207 - -
Pumo5g03117 672 MobiDBLite consensus disorder prediction 1 91 - -
Pumo5g03117 672 Pfam Cactus-binding C-terminus of cactin protein 548 672 IPR019134 GO:0005515
Pumo5g03117 672 MobiDBLite consensus disorder prediction 1 93 - -
Pumo5g03117 672 MobiDBLite consensus disorder prediction 425 449 - -
Pumo5g03117 672 PANTHER POLYGLUTAMINE BINDING PROTEIN 1/MARVEL MEMBRANE-ASSOCIATING DOMAIN CONTAINING 3 75 672 - -
Pumo5g03117 672 SMART CactinC_cactus_3 548 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03117 Pumo-Chr5 79943035 79949506 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03117 K25058 - gmx:100780087 1137.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03117 5 79943035 79949506 Pumo5g03117 5 79943035 79949506 ECH