Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03111 ATGTTCAGATTCTGGGGATCACAAGAGCAACAATCGCAGGATGGTTCTTCACAGTCACAGTCATGGTATCCGCCGTCAGTGGTGAGTTCACCAAATTCATCAAGGCCTGTTACACCGACTGCATCTTCTTCTTCATTATCGCAGAGGCCTTCGTCTCAAGTTCCACCTTCCGAGGCTGCTGGAGTTATTGCCGTTTTGAAGGACAAGAGTGTTGATGAGTTGCGGAAGCTTTTATCTGACAAAGATGCGTATCAACAGTTTTTGCATTCACTTGATCAGGTCAAGATTCAAACTAATCTGAAAGATGAACTTTGCAAGGAGAATTTACAGCTTGCAGAGGAAAATCTTCAAAAGGAACCTCGTATCATGGAACTTAGGAATCAATGTAGAATAATTCGGACAACTGAATTAGCCGCTGCTAAGGAGAAACTAAATGAGCTTGAGAAGCAGAAAGAAGACATGTTGAAATTGAATTCCCCAGCATCCCTTCTCCAAAGGATTCAAGAGTCTGTGAATAAGACTGATGAGGAATCTGAAAATCTGCACCAGCATCTCCTTGACAGAGAGATTGACCTTGGTGCTTTTTTGCAAAAGTACAAGAAGCTACGTACCACTTACCACAAGAAGACTCTCATACATCTTGCTGCTAAAACATCAACAATATGA 666 0.4204 MFRFWGSQEQQSQDGSSQSQSWYPPSVVSSPNSSRPVTPTASSSSLSQRPSSQVPPSEAAGVIAVLKDKSVDELRKLLSDKDAYQQFLHSLDQVKIQTNLKDELCKENLQLAEENLQKEPRIMELRNQCRIIRTTELAAAKEKLNELEKQKEDMLKLNSPASLLQRIQESVNKTDEESENLHQHLLDREIDLGAFLQKYKKLRTTYHKKTLIHLAAKTSTI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03111 221 ProSiteProfiles VPS37 C-terminal domain profile. 141 221 IPR009851 -
Pumo5g03111 221 Coils Coil 130 157 - -
Pumo5g03111 221 SUPERFAMILY Endosomal sorting complex assembly domain 160 209 IPR037202 -
Pumo5g03111 221 MobiDBLite consensus disorder prediction 1 55 - -
Pumo5g03111 221 FunFam Vacuolar protein-sorting-associated protein 37 homolog 1 145 214 - -
Pumo5g03111 221 Gene3D Helix hairpin bin 146 214 IPR029012 -
Pumo5g03111 221 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37 15 219 - -
Pumo5g03111 221 MobiDBLite consensus disorder prediction 1 57 - -
Pumo5g03111 221 Pfam Modifier of rudimentary (Mod(r)) protein 67 211 IPR009851 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03111 Pumo-Chr5 79903136 79907810 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03111 K12185 - gmx:100305851 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03111 5 79903136 79907810 Pumo5g03111 5 79903136 79907810 ECH