Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03052 ATGGCTGTTGGCTCACACCTTCTTTCTCACTCTCCTTCCCTTCCCAAAACCTATAACCACTCCTTAAACCAAAACCCTTTTTCCCAAAAGCTTTTTCTACCTCTCAGATTCAAAGCCCCCCTCAAACATCGTGCTCTTAGAGCGGTTCTCTCTCAGAACACTGCCAAAACAGCGGTAGAGGACTCAAAGAAGGCTCATTTTCAGCACTGTTTCACCAAATCCGAAGATGGGTATCTGTACTGTGAGGGCCTCAAGGTGCATGACATCATGGAATCTGTTGAGAGAAGACCTTTCTATTTGTACAGCAAGCCACAGATAACTAGGAATGTTGAAGCCTATAAGGATGCATTGGAAGGGTTGAACTCCATAATTGGTTATGCCATCAAGGCCAACAATAACTTGAAGATTCTGGAACATTTGAGGCACTTGGGTTGTGGTGCTGTGCTTGTTAGTGGGAATGAGCTTAGGTTGGCTCTTCGTGCTGGCTTTGATCCCACAAGGTGTATCTTTAATGGGAATGGGAAAATCTTGGATGATTTGGTCTTGGCTGCCCAGGAAGGTGTGTTTGTCAACATTGATAGTGAATTTGACTTGGAAAACATTGTAGAGGCTGCAAGAAGGGCTGGGAAGAAGGTCAATGTTTTACTTAGGATTAATCCTGATGTGGATCCGCAGGTCCATCCTTATGTTGCCACTGGGAATAAGAACTCTAAATTTGGCATTAGAAATGAGAAGCTGCAGTGGTTTTTAGATGCAGTGAAGGAGCATCCTAATGAGCTCAAACTTGTTGGGGCCCACTGCCATCTTGGTTCAACAATTACTAAGGTAGACATTTTCAGGGATGCAGCCACCATTATGATCAACTACATTGACCAAATCCGAGCTCAGGGTTTTGAAGTTGATTATTTAAATATTGGCGGAGGCCTTGGGATAGATTATTATCATTCTGGTGCCATCCTTCCTACACCTAGAGATCTCATTGACACTGTACGAGATCTTGTTCTTTCACGTGATCTTAATCTCATCATTGAACCAGGGAGATCACTCATTGCAAACACATGTTGCTTAGTTAACCAGGTGACAGGTGTTAAAACTAACGGATCTAAAAACTTTATTGTAATTGATGGAAGTATGGCTGAACTTATCCGCCCTAGTCTTTATGATGCTTACCAGCATATAGAGCTGGTTTCCCCTGCCCCACCAAATGCTGAGACAGCAACTTTTGATGTGGTCGGCCCTGTCTGTGAGTCTGCAGATTTCTTAGGAAAAGGAAGAGAACTTCCTACTCCAGCCAAGGGTACTGGTTTGGTTGTTCACGATGCTGGTGCTTATTGCATGAGCATGGCATCAACTTACAATCTAAAGATGCGGCCTCCTGAGTATTGGGTTGAAGATGATGGATCAGTGAGCAAAATAAGACATGGAGAGACTTTTGAAGACCACGTTCGGTTTTTTGAGGGCCTTTGA 1467 0.4369 MAVGSHLLSHSPSLPKTYNHSLNQNPFSQKLFLPLRFKAPLKHRALRAVLSQNTAKTAVEDSKKAHFQHCFTKSEDGYLYCEGLKVHDIMESVERRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNLKILEHLRHLGCGAVLVSGNELRLALRAGFDPTRCIFNGNGKILDDLVLAAQEGVFVNIDSEFDLENIVEAARRAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKEHPNELKLVGAHCHLGSTITKVDIFRDAATIMINYIDQIRAQGFEVDYLNIGGGLGIDYYHSGAILPTPRDLIDTVRDLVLSRDLNLIIEPGRSLIANTCCLVNQVTGVKTNGSKNFIVIDGSMAELIRPSLYDAYQHIELVSPAPPNAETATFDVVGPVCESADFLGKGRELPTPAKGTGLVVHDAGAYCMSMASTYNLKMRPPEYWVEDDGSVSKIRHGETFEDHVRFFEGL 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03052 488 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 352 442 IPR022643 GO:0003824
Pumo5g03052 488 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 126 144 IPR022653 -
Pumo5g03052 488 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 86 482 IPR009006 GO:0003824
Pumo5g03052 488 NCBIfam diaminopimelate decarboxylase 73 482 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 341 360 IPR000183 GO:0003824
Pumo5g03052 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 146 158 IPR000183 GO:0003824
Pumo5g03052 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 126 144 IPR000183 GO:0003824
Pumo5g03052 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 259 272 IPR000183 GO:0003824
Pumo5g03052 488 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 442 455 IPR000183 GO:0003824
Pumo5g03052 488 PRINTS Diaminopimelate decarboxylase signature 232 241 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 PRINTS Diaminopimelate decarboxylase signature 369 387 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 PRINTS Diaminopimelate decarboxylase signature 452 474 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 PRINTS Diaminopimelate decarboxylase signature 144 161 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 FunFam Diaminopimelate decarboxylase 103 348 - -
Pumo5g03052 488 FunFam Diaminopimelate decarboxylase 340 482 - -
Pumo5g03052 488 SUPERFAMILY PLP-binding barrel 96 352 IPR029066 -
Pumo5g03052 488 Gene3D Alanine racemase 103 348 IPR029066 -
Pumo5g03052 488 Hamap Diaminopimelate decarboxylase [lysA]. 83 486 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 SUPERFAMILY Alanine racemase C-terminal domain-like 327 483 IPR009006 GO:0003824
Pumo5g03052 488 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 295 310 IPR022657 -
Pumo5g03052 488 PANTHER DIAMINOPIMELATE DECARBOXYLASE 67 485 - -
Pumo5g03052 488 CDD PLPDE_III_DapDC 97 463 IPR002986 GO:0008836|GO:0009089
Pumo5g03052 488 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 105 351 IPR022644 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03052 Pumo-Chr5 78636912 78641587 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03052 K01586 - gmx:100786832 922.154