Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g03042 ATGATGAACAGCACAGCGAACGGCACGATGATGTCACCGTCGTCTTCGTCGGGAACGGCACAGTCGCCGGGACTCAAGACCTATTTCAAAACCCCGGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTATGCCCATGGCAAAACCGTTACTCAGGTAACCCTGGCACATCTCAAGGACAAGCCTGCGCCTTCTACCCCAACTGCGTCGTCTTCAAGTTTCAGTGCCAGCAGTGGGGTACGGTCGGCGGCAGCTAGATTGTTGGGAGGAAGCAACGGCAGCCGGGCACTTAGTTTTGTTGGAGGCAACGGTGGCAGCAAAAGTAATGGAGGAAATACTAGGATTGGTTCCATTGGTGCTTCGAGTACAAGTAGTGCAATGGCAAATCCAAATTTTGACGGGAAAGGAACATACTTGATATTCAATGTTGGGGATGCAATTTTCATTAGTGATTTGAATTCACAAGACAAGGACCCCATAAAGTCTATTCACTTCAGTAACTCGAATCCTGTGTGCCACGCATTTGATCAGGATGCTAAGGATGGGCATGATTTGCTCATTGGTTTGAACTCTGGCGATGTCTACTCAGTGTCACTGAGACAGCAATTACAGGATGTTGGTAAAAAGCTTGTTGGGGCCCAGCATTACAACAAAGATGGTTCTGTCAATAACAGTCGTTGTACTTGTATTGCTTGGGTGCCTGGAGGTGATGGTTCTTTCGTTGTTTCTCACGCTGATGGGAATTTGTACGTGTACGAAAAGAACAAAGATGGTGCTGGTGATTCTTCTTTCCCAGTGGTAAAGGATCAAACTCAATTTTCAGTTGCCCATGCACGTTACAGTAAGAGTAATCCTATAGCCAGATGGCATATATGCCAGGGTTCAATTAATAGTATTTCTTTCTCAATGGATGGGGCATACATAGCAACTGTTGGACGAGATGGTTATTTACGAGTGTATGATTACTCAAAAGAACAACTTATATGTGGCGGGAAAAGTTATTATGGTGCTTTGTTATGTTGTGCTTGGAGCATGGATGGAAAATATATTTTGACGGGAGGGGAAGATGATTTAGTTCAAGTTTGGAGCATGGAAGATCGCAAGGTTGTGGCATGGGGTGAGGGACATAACTCATGGGTAAGTTGCGTGTTAATTTTTAAGTCATGTGCTTGTATGAAACTTTGCTACCATAGGATTGATATAGTTTGTGTCAAATGCTGTGATCAGGTCAGTGGAGTTGCTTTCGATTCATATTGGTCATCACCAAATTCAAATGACAATGGAGAGACTATTATGTATCGTTTTGGTTCTGTTGGTCAGGATACACAATTGCTTCTATGGGACCTGGAAATGGACGAGATTGTAGTGCCCTTGAGGCGGCCACCTGGTGGATCCCCGACTTACAGTACTGGAAGCCAGTCATCACACTGGGACAATGTTGTCCCATTGGGTACCTTGCAACCTGCTCCGAGCATGCGAGATGTTCCAAAAATCTCTCCGTTGGTTGCTCACCGTGTGCATACTGAACCACTCTCTGGCTTGATATTCACCCAGGAATCTGTGCTTACTGCCTGCCGGGAGGGGCACATTAAAATCTGGATGAGGCCAGGGGTTGCTGAGAGCCAATCAAGCAACTCTGAAAACTTGTTAGCTACCAGTCTCAAGGAGAAGCCTTCACTTTCAAGCAAGATCAGCAGTTCTAGCTACAAGCAATGA 1737 0.4554 MMNSTANGTMMSPSSSSGTAQSPGLKTYFKTPEGRYKLQYEKTHPSGLLHYAHGKTVTQVTLAHLKDKPAPSTPTASSSSFSASSGVRSAAARLLGGSNGSRALSFVGGNGGSKSNGGNTRIGSIGASSTSSAMANPNFDGKGTYLIFNVGDAIFISDLNSQDKDPIKSIHFSNSNPVCHAFDQDAKDGHDLLIGLNSGDVYSVSLRQQLQDVGKKLVGAQHYNKDGSVNNSRCTCIAWVPGGDGSFVVSHADGNLYVYEKNKDGAGDSSFPVVKDQTQFSVAHARYSKSNPIARWHICQGSINSISFSMDGAYIATVGRDGYLRVYDYSKEQLICGGKSYYGALLCCAWSMDGKYILTGGEDDLVQVWSMEDRKVVAWGEGHNSWVSCVLIFKSCACMKLCYHRIDIVCVKCCDQVSGVAFDSYWSSPNSNDNGETIMYRFGSVGQDTQLLLWDLEMDEIVVPLRRPPGGSPTYSTGSQSSHWDNVVPLGTLQPAPSMRDVPKISPLVAHRVHTEPLSGLIFTQESVLTACREGHIKIWMRPGVAESQSSNSENLLATSLKEKPSLSSKISSSSYKQ 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g03042 578 MobiDBLite consensus disorder prediction 1 26 - -
Pumo5g03042 578 SMART WD40_4 214 260 IPR001680 GO:0005515
Pumo5g03042 578 SMART WD40_4 331 370 IPR001680 GO:0005515
Pumo5g03042 578 SMART WD40_4 504 541 IPR001680 GO:0005515
Pumo5g03042 578 SMART WD40_4 407 455 IPR001680 GO:0005515
Pumo5g03042 578 SMART WD40_4 289 328 IPR001680 GO:0005515
Pumo5g03042 578 ProSiteProfiles Trp-Asp (WD) repeats profile. 338 379 IPR001680 GO:0005515
Pumo5g03042 578 MobiDBLite consensus disorder prediction 548 578 - -
Pumo5g03042 578 Pfam WD domain, G-beta repeat 300 328 IPR001680 GO:0005515
Pumo5g03042 578 Pfam WD domain, G-beta repeat 345 370 IPR001680 GO:0005515
Pumo5g03042 578 Gene3D - 14 550 IPR015943 GO:0005515
Pumo5g03042 578 SUPERFAMILY WD40 repeat-like 141 540 IPR036322 GO:0005515
Pumo5g03042 578 MobiDBLite consensus disorder prediction 1 28 - -
Pumo5g03042 578 PANTHER WD REPEAT PROTEIN 14 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g03042 Pumo-Chr5 78452426 78458755 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g03042 K24741 - gmx:100782580 985.711
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g03042 5 78452426 78458755 Pumo5g03042 5 78452426 78458755 ECH