Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02995 ATGCCTCGCTATGATGATAAATACGGTAATACCCGCCTCTATGTGGGACACTTGTCTTCGAGGACTCGTTCCCGTGATCTGGAGCGTGTCTTCAGCAGATATGGAAGAGTTCGAGGTGTGGATATGAAGAATGATTTCGCCTTTGTTGATTTTAGTGATCCTCGAGATGCTGATGATGCAAGATATAACTTGGATGGTCGGGATGTTGATGGAAGTCGTATTATTGTGGAATTTGCAAAAGGGGCTCCTCGTGGGTCCCGGGAATATCTGGGGCGAGGTCCTCCGCCTGGCTCTGGACGCTGCTTTAATTGTGGCCTTGATGGTCATTGGGCACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGTCATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGGCGTGGACGGAGTTATTCACGCTCACCAGTCAGGTCACGTTCACCTCGTCGTGGCAGAAGCCGTGATCGCAGTTACAGCCGAGATCGCAGCTACAGTCGATCACGATCCCCTGTCAGAAGAGAAGAAAGCCCTGCTCGTGAAGATATATCACAAAGCCCTGAACACAAAAATAGTCCTCAGCCCTCCAAGACAAGGAAGCATAGTCCATCACCTGACCATAGCCCACAGAAAAGAGGTGACACATCTCCCAGCAATGATAGGTTGAGTAGAAGCCCTAGCCCTAAACTTAATGGTCGTAGTGGCAGCCCTAGCCGTAGCCCCAGGGATGATGACAGGAGCCCCATTGACGATGATGACAACCACCGCCACTCGCCAAGAGGCAGCGAGTCACCTTAA 828 0.5072 MPRYDDKYGNTRLYVGHLSSRTRSRDLERVFSRYGRVRGVDMKNDFAFVDFSDPRDADDARYNLDGRDVDGSRIIVEFAKGAPRGSREYLGRGPPPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIERNCKNSPKKLRRGRSYSRSPVRSRSPRRGRSRDRSYSRDRSYSRSRSPVRREESPAREDISQSPEHKNSPQPSKTRKHSPSPDHSPQKRGDTSPSNDRLSRSPSPKLNGRSGSPSRSPRDDDRSPIDDDDNHRHSPRGSESP 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02995 275 MobiDBLite consensus disorder prediction 229 247 - -
Pumo5g02995 275 SUPERFAMILY Retrovirus zinc finger-like domains 91 139 IPR036875 GO:0003676|GO:0008270
Pumo5g02995 275 Gene3D - 3 89 IPR012677 -
Pumo5g02995 275 MobiDBLite consensus disorder prediction 163 197 - -
Pumo5g02995 275 FunFam Serine/arginine-rich splicing factor RS2Z32 3 86 - -
Pumo5g02995 275 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Pumo5g02995 275 Gene3D - 120 163 - -
Pumo5g02995 275 Gene3D - 91 119 - -
Pumo5g02995 275 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 201 - -
Pumo5g02995 275 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Pumo5g02995 275 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Pumo5g02995 275 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Pumo5g02995 275 SUPERFAMILY RNA-binding domain, RBD 7 100 IPR035979 GO:0003676
Pumo5g02995 275 FunFam serine/arginine-rich splicing factor RS2Z32-like isoform X1 91 119 - -
Pumo5g02995 275 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Pumo5g02995 275 MobiDBLite consensus disorder prediction 140 162 - -
Pumo5g02995 275 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Pumo5g02995 275 SMART rrm1_1 12 77 IPR000504 GO:0003723
Pumo5g02995 275 MobiDBLite consensus disorder prediction 210 228 - -
Pumo5g02995 275 FunFam Serine/arginine-rich splicing factor RS2Z32 120 166 - -
Pumo5g02995 275 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Pumo5g02995 275 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Pumo5g02995 275 MobiDBLite consensus disorder prediction 248 275 - -
Pumo5g02995 275 MobiDBLite consensus disorder prediction 134 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02995 Pumo-Chr5 77981415 77983811 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02995 K12896 - gmx:100789862 440.269