Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02985 ATGGATCATCACCATCATCATCATGCTCATCACACCACACCTCTCTCCGAGCCCACCACCCCAACCACCCCACGCTCCACGTTTTTCCTCTCCACCTCCGGCAAGGCCCTCCTCCTCTCCAACTCCAACAAATCCCTCCTCCTCTCCAACTCCGGCAAGCGCCTCGACACCCCGAGGAAAAAATATGTCAAGCAAGTCACCGGCCGCCACAACGACACCGAGCTCCACCTCGCCGCGCAGCGTGGTGACGTCGCCTCCGTCCGCCACATCCTCGCCGAGATCGACTCCATCATGATGGGGACATTCGAGTTTGACACCGAGGTTGCCAACGTTAGGTCCGCGATCTTCAACGAGGTCAATGAGTTGGGAGAAACCGCTCTCTTCACCGCCGCGGAAAAGGGCCACCTCGACGTCGTCCGGGAGCTCCTCCCTCACACCACCGATGAAGCGCTTTCCTCCAAAAACCGCTCCGGGTTTGACACCTTGCACATTGCCGCTAGCAAAGGTCATCTTGCCATTGTGCAGGCGCTACTAGACCATGACCCTGGGTTGATTAAGACGTTTGCACAGTCAAATGCAACTCCTCTAATCTCTTCAGCTACACGAGGGCATGCAGATGTTGTTGAAGAGTTGTTGTCTCGAGATCCTACTCAGTTGGAGATGACTAGGTCCAACGGAAAAAATGCGCTCCATTTAGCTGCACGACAGGGACATGTGAATGTTGTAAAAATACTACTACGGAAGGATCCACAACTTGCTCGAAGGACTGATAAGAAAGGACAAACTGCATTACACATGGCTGTCAAAGGGGTTAGTTCTGAAGTGGTGAAGCTGATTCTTGCTGCGGATGCAGCCATTGTCATGCTTCCTGACAAGTTTGGCAATACTGCATTGCATGTAGCCACAAGAAAAAAGAGGGCAGAGATAGTGCATGAGCTGTTACTTCTACCTGACACCAATGTAAATACCTTGACAAGAGACCACAAGACAGCTCTAGACCTAGCAGAGGGGCTTCCAATATCTGAAGAAATTCTGGAGATCAAGGAGTGCCTGATTCGTTATGGTGCAGTTAAAGCCAATGATCTGAACCAACCAAGGGATGAGCTAAGGAAAACCATGACACAAATTAAGAAAGATGTATATTTTCAGCTGGAACAAGCTCGAAAAACAAACAGGAACGTGAGTGGGATTGCCAATGAGCTACGCAAGTTGCACAGAGCTGGAATCAACAATGCTGCCAATTCAGTAACGGTGGTTGCTGTGTTGTTTGCAGCAGTTGCATTTGCAGCAATATTCACAGTTCCTGGTGGGGATTATAACAATGGGGTGGCAGTGATGGTACACACGGTGTCTTTCAAGGCCTTCTTCATATCTAATGCCATTGCACTCTTTACATCATTAAGTGTGGTGGTGGTTCAAATCACAATTGTTAGAGGGGAGATAAAGGCTGAAAGAAGGGTTGTGGAGGTGATCAACAAGATGATGTGGCTAGCCTCTGTCTGCACCTCTGTTTCATTCATTACAGCATCTTATATAGTAGTTGGTCGTCGCAGCCTGTGGGCTGCGATTCTTGTTACCATTGTAGGGGGCATCGTAATGGGTGGTGTTCTTGGCACCATGACTTACTATGTGGTGAAATCCAAACGCTCTCGAAGAGTGAGGAAGAAAGAGAAGATCTCTAAGACAGGAACACACTCATGGCGCCTTTCGAATTCTGATGATTCAGAAATAAATCCAATCTATGCCATTTGA 1752 0.4886 MDHHHHHHAHHTTPLSEPTTPTTPRSTFFLSTSGKALLLSNSNKSLLLSNSGKRLDTPRKKYVKQVTGRHNDTELHLAAQRGDVASVRHILAEIDSIMMGTFEFDTEVANVRSAIFNEVNELGETALFTAAEKGHLDVVRELLPHTTDEALSSKNRSGFDTLHIAASKGHLAIVQALLDHDPGLIKTFAQSNATPLISSATRGHADVVEELLSRDPTQLEMTRSNGKNALHLAARQGHVNVVKILLRKDPQLARRTDKKGQTALHMAVKGVSSEVVKLILAADAAIVMLPDKFGNTALHVATRKKRAEIVHELLLLPDTNVNTLTRDHKTALDLAEGLPISEEILEIKECLIRYGAVKANDLNQPRDELRKTMTQIKKDVYFQLEQARKTNRNVSGIANELRKLHRAGINNAANSVTVVAVLFAAVAFAAIFTVPGGDYNNGVAVMVHTVSFKAFFISNAIALFTSLSVVVVQITIVRGEIKAERRVVEVINKMMWLASVCTSVSFITASYIVVGRRSLWAAILVTIVGGIVMGGVLGTMTYYVVKSKRSRRVRKKEKISKTGTHSWRLSNSDDSEINPIYAI 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02985 583 Pfam Ankyrin repeats (3 copies) 192 250 IPR002110 GO:0005515
Pumo5g02985 583 Pfam Ankyrin repeats (3 copies) 75 180 IPR002110 GO:0005515
Pumo5g02985 583 Pfam Ankyrin repeats (3 copies) 257 322 IPR002110 GO:0005515
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat profile. 122 154 IPR002110 GO:0005515
Pumo5g02985 583 Pfam Domain of unknown function 409 513 IPR026961 -
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat profile. 157 180 IPR002110 GO:0005515
Pumo5g02985 583 MobiDBLite consensus disorder prediction 1 27 - -
Pumo5g02985 583 FunFam Ankyrin repeat-containing protein ITN1 218 338 - -
Pumo5g02985 583 Gene3D - 299 353 IPR036770 -
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat region circular profile. 259 286 - -
Pumo5g02985 583 Gene3D - 36 188 IPR036770 -
Pumo5g02985 583 SUPERFAMILY Ankyrin repeat 75 355 IPR036770 -
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat profile. 259 291 IPR002110 GO:0005515
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat region circular profile. 157 180 - -
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat region circular profile. 225 248 - -
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat profile. 293 326 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 293 323 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 225 254 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 122 151 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 259 288 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 191 220 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 157 186 IPR002110 GO:0005515
Pumo5g02985 583 SMART ANK_2a 70 99 IPR002110 GO:0005515
Pumo5g02985 583 ProSiteProfiles Ankyrin repeat profile. 225 257 IPR002110 GO:0005515
Pumo5g02985 583 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 43 562 - -
Pumo5g02985 583 Gene3D - 189 298 IPR036770 -
Pumo5g02985 583 FunFam Ankyrin repeat-containing protein ITN1 45 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02985 Pumo-Chr5 77800003 77802501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02985 16 583 Miscellaneous Gene Families AT3G09550 71.891 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02985 - - gmx:100801840 936.021