Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02962 ATGATGGGTGTTATTTCTTTGGTAACAGGGATGACTGGTCCAAGTGGGTTTGGATCAGCTTCCACTGCACAACAGGTTACTGAAGGAATTGATGCCAGCAACCTCACTGCAATTATCACAGGAGGAGCAAGTGGTATAGGCTTGGAGACAGCACGAGTGTTGGCTCTTCGAAAGGTCCATGTTATCTTTGCAGTACGAAACATGGTGTCTGCAAAGGAAGCTAAACAAAAAATACTTGAGGAGAATGAGTCTGCACGAGTGGACATAATGAAGCTCGACCTTTGCTCAGTGAATTCTGTTAAATCATTTGTGGAAAACTTCATAGCTCTTGATCTTCCTCTCAACATCTTAATAAACAATGCTGGAGTAATGTTCTGCCCCTTCAAGCTCTCAGAGGATGGCATTGAGATGCAATTTGCAACAAACCATCTTGGTCATTTCCACTTGACAAACCTGCTTCTTGACAAAATGAAACAAACTGCAAAAGCCACTGGAATAGAGGGCAGGATCATAAATCTGTCATCAATTGCCCATAACTACACATACAGAAAGGGGATTAGATTTAATAAGATCAATGAACGAAAAGGTTATGGTAAGAAGAAGGCGTATGGACAGTCCAAGTTAGCTAACATATTACATACAAATGAGCTTTCTCGTCGCCTGCAGGAAGAGGGTGTGAACATCACAGCCAACTCGGTCCACCCAGGAGTGATAATGACTCCTCTTATGAGACATTCTTCTTACCTTATGCACTTCCTCAAGGTCTTCACCTTTTACATATGGAAGAACGTCCCCCAGGGAGCAGCCACGACATGCTATGTTGCTCTCCACCCAAGCGTGAAAGGTGTAACTGGGAAGTACTTTGTGGATTGCAATCAATTCAAACCAAGTGCACATGCCAAAAACAAACAGCTAGCAAAGAAACTATGGGATTTCAGTAACGATTTGATCAAATCAATTTCAAAAGCTTGA 972 0.4239 MMGVISLVTGMTGPSGFGSASTAQQVTEGIDASNLTAIITGGASGIGLETARVLALRKVHVIFAVRNMVSAKEAKQKILEENESARVDIMKLDLCSVNSVKSFVENFIALDLPLNILINNAGVMFCPFKLSEDGIEMQFATNHLGHFHLTNLLLDKMKQTAKATGIEGRIINLSSIAHNYTYRKGIRFNKINERKGYGKKKAYGQSKLANILHTNELSRRLQEEGVNITANSVHPGVIMTPLMRHSSYLMHFLKVFTFYIWKNVPQGAATTCYVALHPSVKGVTGKYFVDCNQFKPSAHAKNKQLAKKLWDFSNDLIKSISKA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02962 323 PRINTS Glucose/ribitol dehydrogenase family signature 36 53 IPR002347 -
Pumo5g02962 323 PRINTS Glucose/ribitol dehydrogenase family signature 226 243 IPR002347 -
Pumo5g02962 323 PRINTS Glucose/ribitol dehydrogenase family signature 162 178 IPR002347 -
Pumo5g02962 323 PRINTS Glucose/ribitol dehydrogenase family signature 203 222 IPR002347 -
Pumo5g02962 323 PRINTS Glucose/ribitol dehydrogenase family signature 112 123 IPR002347 -
Pumo5g02962 323 PANTHER RETINOL DEHYDROGENASE 14 318 - -
Pumo5g02962 323 Gene3D - 7 320 - -
Pumo5g02962 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 112 123 IPR002347 -
Pumo5g02962 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 168 176 IPR002347 -
Pumo5g02962 323 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 203 222 IPR002347 -
Pumo5g02962 323 Pfam short chain dehydrogenase 36 182 IPR002347 -
Pumo5g02962 323 CDD retinol-DH_like_SDR_c_like 36 310 - -
Pumo5g02962 323 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 35 296 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02962 Pumo-Chr5 77391643 77399052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02962 35 242 Miscellaneous Gene Families AT2G29340 28.972 5.85e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02962 - K11153 gmx:100801849 615.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02962 5 77391643 77399052 Pumo5g02962 5 77391643 77399052 ECH
Pumo5g02962 5 77391643 77399052 Pumo3g02568 3 38762095 38766797 PCT