Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02930 ATGACAGGGTTTCCTCGCCCTCGCGATCACGCTTCTTCTTCCTCCTCCTCCTCGCACAATTCTAACAGCAGTGGTAGCAATGTATTTAATTTGCTTGCAAGGAGGGAGATCTCGCCCCGAACAAAATACGTAGCAAAATGGCACTGGGGAGAAGCTTCTAAATCAAAGTCTAGTCCTTATTCTCGTCCTAAAAATGAAGTTGTGAGAGATGCAAGACGCGGTCTCCTTTCATGGGTTGAGGCTGAGTCATTGCGGCATTTGTCAGCTAAGTATTGTCCTTTATTGCCTCCTCCACGGTCTACTATTGCAGCAGCATTTAGTCCAGATGGAAAAGTTCTTGCCTCCACACATGGTGACCACACAGTAAAGATAATTGATTGTGAAACTGGAAGTTGCTTAAAGGTGTTAGTTGGCCATAGGAGAACGCCTTGGGTGGTCAGGTTCCATCCATTGCATCCACATATACTTGCTAGTGGGAGTTTGGATCAAGAAGTTCGTTTATGGGATGCTAACACATCAGAGTGCATAATATCTCATCATTTCTATCGTCCCATTGCATCTATTGCTTTTCATGCCAAAGGTGAAATAATTGCCGTTGCATCTGGCCACAAGCTGTACATATGGCACCACAACAAGAAAGGTGAAGCATCCTCACCAATATTTGTGTTGAAGACAAAGCGCTCCCTTCGTGCTGTGCATTTTCACCCTCACGCCGCACCATATCTTTTAACTGCAGAGGTCAATGATCTTGACTCTTCAGATTCCTCAATGACAGAGGCAACATCTCTTGGTTATTTACAATATCCTCCTCCTGCTGTTTTTGTCACAAATATTCATCCTACAGATATTAGTTTGTCCAGCGAATTACCTTTCTTCTTTATGCCCTCATATACTGTTGATGAGTCAAGAGCAGTACTACAGCATACTAGTCATGATGTTGGCTCAGGTAACATGCAAATTGAGTCTTCTGCCATGGTACAGTTACAAGCAGACACAAGTGCAGCAGAGCATTATGAAACTACAGTGTCTCCCATGGATACATTCTCTGAGATGCCCTCTAGCTCTCAAACTGGTGCAGAATATCCTGCTCATAATGCGTTATCTAATGGAATGGGAATTGGCCTCAGTAATCTCACAATGGATGGTATGGAGACTGATGAAACCAGACCTGCTGAAGGAAGCCAACATGGGAACTCGACTAACAACTATTCTTTTAATGGCATGCTACACGGACTGTCTAGGCATACTGCAAACTGTGGGGTTCTCTCAGAGTTTGGTCAATTTCATCAGTTTTTTCCTTCAAGTTCAAGAGACCCAAGTGAATGGGAGTGGCCTTTTCTCCAAGGATGGTTAATGGGTCAAAGCCAAGTTGGTGTTCCTTCAATGCTTCCTCACATGGGTGCTAGTCGTGACAATCTATCCCAACAGATTGGTTCTTCCATAATGGCATCTAATCTTTCCACTTCCAATGCTGATGCAGCAATGCCATCTTCAGCAATACCTGGCAGCATCAGCATACCGGGTTCTTCAATGAGATCAGGTTTACGGAATCATTTTTCACAATCCCGTGTACCTGTAGCTGAATCTGGCAATCTTGCAGCTTCTATTAATACCCCACATGATGGATCCGATATCCAAACCATTGTAAGTCGAATTCAGTCAGAACTTGCCACATCAGTGACTGCTGCAGAGTTGCCTTGTACTGTGAAGTTAAGAGTATGGTCACATGACATAAAAAATCCCTGTGCCCCACTTAATGCTGAGAGATGTCGTCTAACCATACCACATGCTGTCCTCTGCAGTGAAATGGGTGCTCATTTTTCACCATGCGGTAGATTTTTAGCTGCCTGTGTTGCATGTATGCTTCCTCATATAGAAGCTGATCCAGGATTACAAACTCCAGTACACCAAGATCCTGGTGTTGCAACATCACCAACCCGTCATCCAATTTCAGCACACCAAGTTATGTATGAGCTGCGGATATATTCCCTCGAGGAGGCAACATTTGGTTCGGTGCTTGCTTCACGGGCAATTAGAGCAGCTCATTGTCTGACTTCAATTCAGTTCTCGCCTACATCTGAGCACATACTGCTTGCGTATGGTCGACGCCATGGTTCTCTTCTTAAAAGTATTGTCATTGATGGAGAAACAACATTACCTATATATACTGTGTTAGAGGTATACAGAGTGTCAGATATGGAACTTGTCAGGGTGCTTCCTAGTGCAGAAGACGAGGTCAATGTGGCATGCTTTCATCCTTTTGCCGGGGGAGGACTAGTTTATGGAACAAAGGAAGGAAAGCTCAGGGTCCTCCAGTATGATGGTGCTCATGCAGTGAATGGCACTGGACCAAGTTACTTTCCTGAGGAAACCATCATTGGAGTCAGTCAGTGA 2394 0.4444 MTGFPRPRDHASSSSSSSHNSNSSGSNVFNLLARREISPRTKYVAKWHWGEASKSKSSPYSRPKNEVVRDARRGLLSWVEAESLRHLSAKYCPLLPPPRSTIAAAFSPDGKVLASTHGDHTVKIIDCETGSCLKVLVGHRRTPWVVRFHPLHPHILASGSLDQEVRLWDANTSECIISHHFYRPIASIAFHAKGEIIAVASGHKLYIWHHNKKGEASSPIFVLKTKRSLRAVHFHPHAAPYLLTAEVNDLDSSDSSMTEATSLGYLQYPPPAVFVTNIHPTDISLSSELPFFFMPSYTVDESRAVLQHTSHDVGSGNMQIESSAMVQLQADTSAAEHYETTVSPMDTFSEMPSSSQTGAEYPAHNALSNGMGIGLSNLTMDGMETDETRPAEGSQHGNSTNNYSFNGMLHGLSRHTANCGVLSEFGQFHQFFPSSSRDPSEWEWPFLQGWLMGQSQVGVPSMLPHMGASRDNLSQQIGSSIMASNLSTSNADAAMPSSAIPGSISIPGSSMRSGLRNHFSQSRVPVAESGNLAASINTPHDGSDIQTIVSRIQSELATSVTAAELPCTVKLRVWSHDIKNPCAPLNAERCRLTIPHAVLCSEMGAHFSPCGRFLAACVACMLPHIEADPGLQTPVHQDPGVATSPTRHPISAHQVMYELRIYSLEEATFGSVLASRAIRAAHCLTSIQFSPTSEHILLAYGRRHGSLLKSIVIDGETTLPIYTVLEVYRVSDMELVRVLPSAEDEVNVACFHPFAGGGLVYGTKEGKLRVLQYDGAHAVNGTGPSYFPEETIIGVSQ 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02930 797 ProSitePatterns Trp-Asp (WD) repeats signature. 156 170 IPR019775 -
Pumo5g02930 797 FunFam Activating molecule in BECN1-regulated autophagy protein 83 263 - -
Pumo5g02930 797 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 136 174 - -
Pumo5g02930 797 MobiDBLite consensus disorder prediction 1 29 - -
Pumo5g02930 797 MobiDBLite consensus disorder prediction 7 29 - -
Pumo5g02930 797 Pfam WD domain, G-beta repeat 130 169 IPR001680 GO:0005515
Pumo5g02930 797 Pfam WD domain, G-beta repeat 103 126 IPR001680 GO:0005515
Pumo5g02930 797 SMART WD40_4 129 169 IPR001680 GO:0005515
Pumo5g02930 797 SMART WD40_4 172 209 IPR001680 GO:0005515
Pumo5g02930 797 SMART WD40_4 88 126 IPR001680 GO:0005515
Pumo5g02930 797 SMART WD40_4 732 772 IPR001680 GO:0005515
Pumo5g02930 797 Gene3D - 84 258 IPR015943 GO:0005515
Pumo5g02930 797 PANTHER ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 23 792 - -
Pumo5g02930 797 ProSiteProfiles Trp-Asp (WD) repeats profile. 136 178 IPR001680 GO:0005515
Pumo5g02930 797 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 99 774 IPR011047 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02930 65 208 Miscellaneous Gene Families AT5G08390 29.412 4.12e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02930 K17985 - gmx:100817857 1453.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02930 5 76790930 76798565 Pumo5g02930 5 76790930 76798565 ECH