Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02920 ATGGAGGAGGAAGGTGACATATACGACGGTGTTCGAGCTCAGTTCCCTCTTTCGTTCGGGAAGCAATCGAAGCCTCAAACCCCTCTTGAAGCCATCCACAATGCGACACGTCGTTCCAATCCCAATCCCAATTCCAAAACCGCCAACGACCTTCCTTCTATCTCCTCCTCTTCCAGGGAATGGCTCAATTCCCTCCGCCCTTCCAAAAACCCTACTCCTCCGCCGCCGCCCGATCACGACGACGATGGCCCTATGGTGGGACCGCCACCGCCGCCGCCGCCGCTGCCCACAGCTGCCGACGAAGACGACGACGGCGAGATGATTGGTCCACCCCCGCCGCCGCCGCCGAACGCGTCGGAATCCGAAGACGATTCGGATCAAGACGAGGTAGGGACCCGCTTCCGGATTCCCCTCAGCAACGAGATTGTACTCAAGGGCCACACCAAGGTTGTGTCAGCTCTTGCTGTGGATCACACTGGATCCAGAGTGCTTTCTGGAAGCTATGACTATACAGTACGAATGTATGACTTTCAAGGAATGAATGCTCGTCTGCAATCGTTTCGACAGTTGGAGCCATTTGAAGGTCATCAAGTTCGCAATTTAAGCTGGAGTCCATCTGCAGATCGCTTTTTGTGTGTGACTGGATCAGCTCAAGCAAAGATTTATGATCGTGATGGGCTTACTTTGGGAGAGTTTGTGAAGGGAGACATGTATATTCGTGATCTAAAGAATACCAAGGGCCACATATCTGGATTGACATGTGGAGAGTGGCATCCAAAAACTAAAGAGACCATTTTAACATCATCAGAGGATGGCTCACTACGCATATGGGATGTCAATGACTTCAAAAGTCAGAAGCAGGTCATTAAACCAAAGCTTGCAAGACCTGGAAGAGTTCCTGTCACCACATGTGCATGGGATCGTGATGGTAAATGCATTGCTGGTGGTATAGGAGATGGTTCGATCCAGATTTGGAATATTAAGCCTGGATGGGGGAGTAGGCCAGATGTACATATTGAAAAAGGTCATGAGGATGATATTAGTGGTCTGAAATTTTCTAGTGATGGGAGAATCTTATTGTCAAGGAGTTTTGATGGTTCATTGAAGGTTTGGGATCTGCGCAAAACAAAAGAACCATTAAAGGTATTTGAGGATCTGCCAAATCACTATGGACAAACAAATATTGCCTTCAGTCCTGATGAGCAACTCTTTTTGACTGGAACATCTGTGGAAAGGGAGAGCTCGGCAGGAGGTTTATTGTGCTTCTTTGATAGAGTAAACCTTGAGCTTGTTTCAAGAGTTGGCATATCACCCACTTGTAGTGTTGTTCAGTGTTCTTGGCATCCTAAACTGAATCAGATCTTTGCAACTACTGGTGATAAAAACCAAGGAGGGACTCACATACTATATGATCCAACCGTAAGTGAGAGAGGAGCTCTTGTATGTGTTGCACGTGCACCAAGGAAAAAATCAATTGATGACTTTGAGGCAAAACCTGTCATTCACAATCCTCACGCTTTACCACTATTTAGAGATCAGCCAAGCCGTAAGCGTCAGCGAGAGAAAGTGCTAAAGGATCCATTGAAGTCTCATAAGCCTGAACTACCTATGACAGGTCCTGGCTTTGGTGGACGAGTTGGTACTAGTCAAGGAAGCTTACTGACCCAGTATCTTCTAAAGAAAGGTGGTATGATCAAGGAGACATGGATGGAGGAAGATCCAAGGGAAGCTATCCTGAAATATGCTGATGCTGCAGCAAAGGATCCAAAGTTCATTGCTCCAGCATATGCAGAAACCCAACCTGAGGCAGTTTTTGCAGAGTCAGATTCTGAGGATGAAGAGAAATGA 1848 0.4713 MEEEGDIYDGVRAQFPLSFGKQSKPQTPLEAIHNATRRSNPNPNSKTANDLPSISSSSREWLNSLRPSKNPTPPPPPDHDDDGPMVGPPPPPPPLPTAADEDDDGEMIGPPPPPPPNASESEDDSDQDEVGTRFRIPLSNEIVLKGHTKVVSALAVDHTGSRVLSGSYDYTVRMYDFQGMNARLQSFRQLEPFEGHQVRNLSWSPSADRFLCVTGSAQAKIYDRDGLTLGEFVKGDMYIRDLKNTKGHISGLTCGEWHPKTKETILTSSEDGSLRIWDVNDFKSQKQVIKPKLARPGRVPVTTCAWDRDGKCIAGGIGDGSIQIWNIKPGWGSRPDVHIEKGHEDDISGLKFSSDGRILLSRSFDGSLKVWDLRKTKEPLKVFEDLPNHYGQTNIAFSPDEQLFLTGTSVERESSAGGLLCFFDRVNLELVSRVGISPTCSVVQCSWHPKLNQIFATTGDKNQGGTHILYDPTVSERGALVCVARAPRKKSIDDFEAKPVIHNPHALPLFRDQPSRKRQREKVLKDPLKSHKPELPMTGPGFGGRVGTSQGSLLTQYLLKKGGMIKETWMEEDPREAILKYADAAAKDPKFIAPAYAETQPEAVFAESDSEDEEK 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02920 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 144 185 IPR001680 GO:0005515
Pumo5g02920 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 340 374 - -
Pumo5g02920 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 245 287 IPR001680 GO:0005515
Pumo5g02920 615 MobiDBLite consensus disorder prediction 512 543 - -
Pumo5g02920 615 FunFam WD repeat-containing protein 70 233 475 - -
Pumo5g02920 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 245 280 - -
Pumo5g02920 615 PANTHER GASTRULATION DEFECTIVE PROTEIN 1-RELATED 9 614 - -
Pumo5g02920 615 FunFam Nucleotide binding protein 89 232 - -
Pumo5g02920 615 Gene3D - 98 231 IPR015943 GO:0005515
Pumo5g02920 615 Gene3D - 232 472 IPR015943 GO:0005515
Pumo5g02920 615 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 144 178 - -
Pumo5g02920 615 MobiDBLite consensus disorder prediction 68 98 - -
Pumo5g02920 615 MobiDBLite consensus disorder prediction 512 532 - -
Pumo5g02920 615 SUPERFAMILY WD40 repeat-like 125 461 IPR036322 GO:0005515
Pumo5g02920 615 ProSitePatterns Trp-Asp (WD) repeats signature. 313 327 IPR019775 -
Pumo5g02920 615 MobiDBLite consensus disorder prediction 1 129 - -
Pumo5g02920 615 MobiDBLite consensus disorder prediction 19 67 - -
Pumo5g02920 615 PRINTS G protein beta WD-40 repeat signature 265 279 IPR020472 -
Pumo5g02920 615 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Pumo5g02920 615 PRINTS G protein beta WD-40 repeat signature 359 373 IPR020472 -
Pumo5g02920 615 ProSiteProfiles Trp-Asp (WD) repeats profile. 340 381 IPR001680 GO:0005515
Pumo5g02920 615 Pfam WD domain, G-beta repeat 300 326 IPR001680 GO:0005515
Pumo5g02920 615 Pfam WD domain, G-beta repeat 142 176 IPR001680 GO:0005515
Pumo5g02920 615 Pfam WD domain, G-beta repeat 243 278 IPR001680 GO:0005515
Pumo5g02920 615 Pfam WD domain, G-beta repeat 338 372 IPR001680 GO:0005515
Pumo5g02920 615 CDD WD40 143 461 - -
Pumo5g02920 615 SMART WD40_4 186 223 IPR001680 GO:0005515
Pumo5g02920 615 SMART WD40_4 333 372 IPR001680 GO:0005515
Pumo5g02920 615 SMART WD40_4 235 278 IPR001680 GO:0005515
Pumo5g02920 615 SMART WD40_4 282 326 IPR001680 GO:0005515
Pumo5g02920 615 SMART WD40_4 376 424 IPR001680 GO:0005515
Pumo5g02920 615 SMART WD40_4 137 176 IPR001680 GO:0005515
Pumo5g02920 615 ProSitePatterns Trp-Asp (WD) repeats signature. 265 279 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02920 Pumo-Chr5 76620482 76624343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02920 247 445 Miscellaneous Gene Families AT5G08390 25.500 4.95e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02920 K24752 - gmx:100815380 1115.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02920 5 76620482 76624343 Pumo5g02920 5 76620482 76624343 ECH