Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02904 ATGGCGTCTTCCTATCCCGGTTCTGTCAGTGCCGCGCAGGTTGGTTCCTACTTCGTTGGACAGTACTATCAGATTCTTCGCCAGCAACCAAATCTCGTTCACCAGTTCTACTCCGATTCCAGCAGCATGATTCGCGTCGATGGAGATACCGTTGAAACCGCGCACGATGTGTTGCAAATTCATTCAATTGTCTCGTTACTGAATTTTACTACGATTGAGATCAAGACAATCAATTCTCTTGACTCTTGGGATGGAGGTGTGCTTGTGATGGTCTCAGGTTTTGTGAAGATAAAGGATATCAGTGGGAGGCGGAAGTTTGTTCAAACTTTCTTTCTTGCTCCTCAGGAGAAGGGTTACTTTGTACTGAATGATATGTTCCATTTCATTGACGATGGAGTAACGTACCCAAATCTGGTACCAGTGGCATCGGAAACGATCGACACACAACCTCATGTTTCTGCTTCTCTTGCAGAGCCACCAGCTTCAGACTATGGTTTGGAGGAAGAAGCCAGGGAATATGTCAACTCAGTTCATATAGATGATGATCCAGTGGACAAGTATAGTCTTCCTGAGCACCAGCAGCAGCTACAAGAAGATCTTGAAACCGAAATTGTGGTGGAGGAAACTCCTGTACAGGAGGCATCTCCACCAATTCATAGCATGGCACACACTGTCCAAGAACCCCCTGTTGCTCATGTGGAAGAGTCTTTTGAAGAGGCTCCTAAGAAAACTTATGCATCTATTTTACGAGTCTCCAAAGGGCAGCCAGTGTTGTCAGCTGCTCCACAGCATGTTCCACAACATTCTTTTAAAAGTGCTCCACCTCCTCCAGAGTTGAACCATGTAGCACAGCCTGCTGTTCAGCAGTCAAGCTCTGCATCTATGTATGTTCCCGAGTCAGGGGCTGAGGCAGCAGAGGAAAGCTATGGACTAGAAGAAGAAGATGAAGTAACATCTGTATATGTTAGAAACTTGCCTGCAAATGTCACTGAAGCGGAGATTGACCAGGAATTTAAGAATTTTGGCAGAATTAAGCCAGATGGAATATTCATTAGGGTCCGAAAGGAAATTGGAGTCTGCTATGCATTTGTGGAATTTGAAGACATCATTGGTGTTCAAAATGCACTTCAGGCTTCTCCAATCCAATTGGCTGGAAGACAAGTATACATAGAGGAGCGGAGGCCAAACAGTGTTGTTGCGGCTCGGGGAGGAAGAAGGGGAAGAGGCAGAGGCAGTTATCAAACAGATGCTCCGAGAGGGCGTTTTGGTGGTAGGAGCATGGGAAGGGGAGGTAATCAGGATAGTTCAGACTTCACCAGACTAAGAGGCGATGGTTATCTTCAGCGTGGTTCACGATGA 1359 0.4621 MASSYPGSVSAAQVGSYFVGQYYQILRQQPNLVHQFYSDSSSMIRVDGDTVETAHDVLQIHSIVSLLNFTTIEIKTINSLDSWDGGVLVMVSGFVKIKDISGRRKFVQTFFLAPQEKGYFVLNDMFHFIDDGVTYPNLVPVASETIDTQPHVSASLAEPPASDYGLEEEAREYVNSVHIDDDPVDKYSLPEHQQQLQEDLETEIVVEETPVQEASPPIHSMAHTVQEPPVAHVEESFEEAPKKTYASILRVSKGQPVLSAAPQHVPQHSFKSAPPPPELNHVAQPAVQQSSSASMYVPESGAEAAEESYGLEEEDEVTSVYVRNLPANVTEAEIDQEFKNFGRIKPDGIFIRVRKEIGVCYAFVEFEDIIGVQNALQASPIQLAGRQVYIEERRPNSVVAARGGRRGRGRGSYQTDAPRGRFGGRSMGRGGNQDSSDFTRLRGDGYLQRGSR 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02904 452 ProSiteProfiles Nuclear transport factor 2 domain profile. 14 128 IPR018222 -
Pumo5g02904 452 MobiDBLite consensus disorder prediction 287 309 - -
Pumo5g02904 452 SMART rrm1_1 319 391 IPR000504 GO:0003723
Pumo5g02904 452 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 320 383 IPR000504 GO:0003723
Pumo5g02904 452 SUPERFAMILY NTF2-like 10 131 IPR032710 -
Pumo5g02904 452 Gene3D - 5 132 - -
Pumo5g02904 452 SUPERFAMILY RNA-binding domain, RBD 314 425 IPR035979 GO:0003676
Pumo5g02904 452 Gene3D - 296 439 IPR012677 -
Pumo5g02904 452 FunFam Nuclear transport factor 2 family protein 307 446 - -
Pumo5g02904 452 CDD NTF2 10 130 IPR018222 -
Pumo5g02904 452 Pfam Nuclear transport factor 2 (NTF2) domain 14 128 IPR002075 -
Pumo5g02904 452 CDD RRM_SF 320 391 - -
Pumo5g02904 452 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723
Pumo5g02904 452 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 10 446 IPR039539 -
Pumo5g02904 452 MobiDBLite consensus disorder prediction 400 452 - -
Pumo5g02904 452 FunFam Nuclear transport factor 2 family protein 5 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02904 Pumo-Chr5 76357620 76364091 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02904 - - gmx:100787900 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02904 5 76357620 76364091 Pumo5g02904 5 76357620 76364091 ECH