Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02782 ATGCTTGCAATAAGAAAGCTCAAAACAGGACCTGATATCCCTTTTGTGTTATATGTCATGGTTGCTAATTGCAATTATAGCACAGCCAGAGTTTTCAGTAAAAATAGTGTCCAGTCTATTGTTAAGTCTGTTGGCCCTTATTTAGCCAACTCAAGTTCACAAGCATTTCCGCTGGGATCAGAGAATAAATTTACTCTTCAAGGACTATATTTCTCTAGTGTGGCTGAAAGAATCCTTGTCCAGGCTCAAGACCCAGCCAAAGTTAGTTTGGAGATACAAAATGCTATCGATGCGAATCAATTAGATTATTCATGGAAATTATTTGAGCAGCATATGCACATGGAGGGATTTCCTCGAAAATCTGTCATCAGCAAGCTTGTAACAAGTTATGTGGACAGCCTTGATACGCAATGGCTAGGAAAAGCTTATGAATTGGTAGAACGTGCTATTGAGGAAGGTAAACAAGACTTGTTAGAAAAGGAGGTGCTTATCTACCTTAGCTTTGGCCTTGCAAAAGCCAGACTACCAGTTCCAGCATCAACCGTTTTAAGAAAGATGATAGCTTTGGAGCATTTCCCCCCAGTCACTGCTTGGTCTGCAGTTTTGGCACACATGTCACAAACAGCAGAGGGAAGTTACCTTGCTGCTGAGTTGATTCTTGAAATAGGTTATTTGTTCCAGAACAATAGAGTAGATCCGCGTAAAAAGAGCAATGCACCTTTGATAGCCATGAAACCAAACACTGCTGCTTTTAACATTGCTTTGGCAGGGTGTCTCTTATTTGAAACATCTAGGAAGGCAGAGGAGCTTCTTGATATGATGCCTCGAATTGGTGTCAAAGCTGATGCAAATTTACTGATAATAATGGCACGTGTATATGAGAGAAATGGGCGAAGAGAAGAGCTCAAGAAGCTGCAAAGGCACATAGAGGAAGCTCCAAATCTAACTGATTTGCAGTTCCGGCAGTTCTATAATTGTTTGTTGACATGCCATTTGAAATTTGGGGATCTAGATTCTGCATCAAACATGGTTTTGGAAATGCTTAGGAAAGCAAAGGAAGCAAGAAATTCTCTTGCAGCTGCCAAATTTATGACAAATGCTGCTGAAATTGATCATAACCACTCTCCTGGACTGGCTTCCATGCATAGTTTGAACAACAGTAAAGATTTAGATAGTTTAGAAAATAACCGGCCAATTAGAAATGCTGTATTATCTTATGAGGAGTTCTCTAAAGATAGACATTTCTCAAAGCTTGAATCAGAGTCAAAAGCTATACTTGGTACTTTATTAGCTAAGTTGCAGATACAGGTGGACTTGATTACAACCAAACATGGTATACTGCAGCCAACTGAAACAATTTATGTGAAATTAGTTAAAGCTTTTCTAGAAGCCGACAAGACCAAGGATTTAGCAATGTTTCTTCTCAAGGCAGAAAGAGAAGATTGTCCCTTTTCCAATGACAACTCAGCCTTGGTTCATGTTATTAATGCATGCATTTCACTTGGATGGCTGGATCAAGCACATGATCTCCTTGATGAGATGCGTCTAGCCGGAGTTAGAACCGGTTCATCTGTATACTCCTCTCTTCTGAAAGCATATTGCCGAGCAAATAGGGCTGCAGATGTCACATCACTTCTGAGAGATGCTAAGATAGCTGGTATCCAGCTTGACTCAAGCTCTTATGAAGCAATGATCCAATCCAGGGTGCTCCAGCAAGACACACAGGGAGCACTCCAACTATTTAAAGAGAGAAAAGAGGCTAGAATTCCAAAAATCACTCAACAAAACTCTGGCTTGATGGCTAAAAGTGGTGCAGAGACAGATGAAGCTGGGCTGATGACCAAGCTGTTGCAGGAAATCAAGCAAGGGCAGAGAGTGGATTGTGGAGTTCATGACTGGAATAATGTAATCCACTTTTTTTGCAAGAAGAGACTGATGCAAGATGCTGAAAAAGCTCTAAAGAAAATGAGAAGCTTAGGCCACTCGCCAAATGCGCAAACTTTCCATTCTATGGTCACTGGGTATGCTGCTGTTGGAGGGAAATATCAAGAGGTGACAGAACTGTGGGGTGAGATGAAAGCTCTTGCTGCTTCTATCTCCATGAAGTTTGATCAGGAACTTCTCGATTCTGTGCTGTATACATTTGTGAGGGGCGGATTCTTCGTTCGAGCCAATGAAGTTGTGGCAATGATGGAAAAAGGAAACATGTTTGTTGACAAGTACAAGTACCGAATGCTATTCTTGAAATACCATAAAACACTTTACAAAGGCAAGGCTCCAAAATTTCAGACAGAATCCCAACTAAACAAAAGGGAAGCAGCCCTGGCTTTTAAAAGGTGGATAGGCTTGAATTGA 2355 0.4098 MLAIRKLKTGPDIPFVLYVMVANCNYSTARVFSKNSVQSIVKSVGPYLANSSSQAFPLGSENKFTLQGLYFSSVAERILVQAQDPAKVSLEIQNAIDANQLDYSWKLFEQHMHMEGFPRKSVISKLVTSYVDSLDTQWLGKAYELVERAIEEGKQDLLEKEVLIYLSFGLAKARLPVPASTVLRKMIALEHFPPVTAWSAVLAHMSQTAEGSYLAAELILEIGYLFQNNRVDPRKKSNAPLIAMKPNTAAFNIALAGCLLFETSRKAEELLDMMPRIGVKADANLLIIMARVYERNGRREELKKLQRHIEEAPNLTDLQFRQFYNCLLTCHLKFGDLDSASNMVLEMLRKAKEARNSLAAAKFMTNAAEIDHNHSPGLASMHSLNNSKDLDSLENNRPIRNAVLSYEEFSKDRHFSKLESESKAILGTLLAKLQIQVDLITTKHGILQPTETIYVKLVKAFLEADKTKDLAMFLLKAEREDCPFSNDNSALVHVINACISLGWLDQAHDLLDEMRLAGVRTGSSVYSSLLKAYCRANRAADVTSLLRDAKIAGIQLDSSSYEAMIQSRVLQQDTQGALQLFKERKEARIPKITQQNSGLMAKSGAETDEAGLMTKLLQEIKQGQRVDCGVHDWNNVIHFFCKKRLMQDAEKALKKMRSLGHSPNAQTFHSMVTGYAAVGGKYQEVTELWGEMKALAASISMKFDQELLDSVLYTFVRGGFFVRANEVVAMMEKGNMFVDKYKYRMLFLKYHKTLYKGKAPKFQTESQLNKREAALAFKRWIGLN 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02782 784 PANTHER BNAC05G43320D PROTEIN 32 784 - -
Pumo5g02782 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Pumo5g02782 784 Gene3D Tetratricopeptide repeat domain 87 391 IPR011990 GO:0005515
Pumo5g02782 784 Gene3D Tetratricopeptide repeat domain 598 780 IPR011990 GO:0005515
Pumo5g02782 784 Pfam PPR repeat 324 350 IPR002885 -
Pumo5g02782 784 Pfam PPR repeat 494 519 IPR002885 -
Pumo5g02782 784 Pfam PPR repeat family 631 676 IPR002885 -
Pumo5g02782 784 NCBIfam pentatricopeptide repeat 633 665 IPR002885 -
Pumo5g02782 784 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 629 663 IPR002885 -
Pumo5g02782 784 Pfam Pentatricopeptide repeat domain 544 589 IPR002885 -
Pumo5g02782 784 Gene3D Tetratricopeptide repeat domain 439 597 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02782 Pumo-Chr5 74720724 74724370 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02782 525 746 Miscellaneous Gene Families AT4G11690 20.444 6.60e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02782 - - gmx:102661989 1437.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02782 5 74720724 74724370 Pumo5g02782 5 74720724 74724370 ECH