Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02778 ATGAGCATGGAATCGAAATCCAAGAAGGACATCGAAGTGGCTCCGGCCCTCATCGCCGTTCACCCCGACCATTCCTCCGTCGCCGTCGCAGTGGGCCCACACCTCCGCGTCTTCGACCTTGTTGCCGGTTCCGCAGCTTCTTTAACGGACGACTCTGTTGCCGTCCCGCTCCACAAGGACAACATCAGAGCCATTCGCTTCGGCGCCAAAGGAAAACTATTCGTTTCCGCTGGTGACGATAAAACCGTCAAGGTCTGGTCAACACAGTCCTGGCGTTGCATCACCACCGTGTCCTCCGAGAAGAGAGTAACCGCAGTTGCAATTAGCAACGACGGAACCTTCGTGTGCTTCGCGGACAAATTCGGCGTTGTTTGGGTTGTGGATCTCGATCCACCGTTACGCGATAAGAAACCGGCACCGCTTCTTTCTCACTATTGCAGTATCATCACTAGCTTGGAATTTTCACCGGATGGTCGCTTTATTTTAAGCGCCGATCGTGATTTCAAAATTCGCGTTACTAATTTTCCCAAGAAGCCCTTAAATGGAGCTCACCAGATACAAAGTTTCTGTCTCAGTCATACAGAGTTTGTTTCCTGCCTTGCCTTCATTCAGGCTCAGGAATGCCCTCAAGGCCTTCTTCTCTCTGGCAGTGGTGATTCCACTGTTAGTAATTCATTCAACATCCCTGTTTATTTTCTTTATGATTCTCTTTTGGATGAAAGTGATGTGAATTGCTTTTCGCAGGTCCGATTGTGGAATATTGACTCTGGAGCACTTCTAGATACTTGTGAGGTTGCAATTAAGGCAGGACTTTTAGAATCTAATGATAAAGCAGAGGAGCATGGCCATGCTGTTACTGATTTATGCACCCTCCTGGATGGTTTACTTGTTGCAGTGGCCGTTCAGAGCTTGCAAGGAGTAGTACTGTTGAGTTGCAATGTTTCTGCACAAACTCTTTCTGTTGCCAAGGTGGTTTCCATTGCTGGAGAGGCCTTTGTCCCTACCTGCTTGGGGAGCAGCCCCTCTACAGGGAAATTGTGGATGGTAACAGGTGTCTCTAGTCTACCTGGTTGTAATTATCCCTCCTTGGCTCGAGTCCGAGTAATTTCTGGTATTAATGTTGAGCAAGAGCCGGTTGTTCTGGGAGATGATAACATACCTGGGGGAGAAAAGCTGCTAGAAACGTTGCAAGGAACTGCATCCGTTGATGACAAAGCTTTTCTAGCAGCAGCTGAAGCTGTCAAAGCAGCCATGTGCAACCTATTAATTAAAAAACAATACCCTTCAGAGAATAGAGAATCTAGGAAGAAAAGCAGAAATGATAGAAAACTCAAGGGCTAG 1341 0.475 MSMESKSKKDIEVAPALIAVHPDHSSVAVAVGPHLRVFDLVAGSAASLTDDSVAVPLHKDNIRAIRFGAKGKLFVSAGDDKTVKVWSTQSWRCITTVSSEKRVTAVAISNDGTFVCFADKFGVVWVVDLDPPLRDKKPAPLLSHYCSIITSLEFSPDGRFILSADRDFKIRVTNFPKKPLNGAHQIQSFCLSHTEFVSCLAFIQAQECPQGLLLSGSGDSTVSNSFNIPVYFLYDSLLDESDVNCFSQVRLWNIDSGALLDTCEVAIKAGLLESNDKAEEHGHAVTDLCTLLDGLLVAVAVQSLQGVVLLSCNVSAQTLSVAKVVSIAGEAFVPTCLGSSPSTGKLWMVTGVSSLPGCNYPSLARVRVISGINVEQEPVVLGDDNIPGGEKLLETLQGTASVDDKAFLAAAEAVKAAMCNLLIKKQYPSENRESRKKSRNDRKLKG 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02778 446 PANTHER WD40 REPEAT PROTEIN 4 14 438 IPR028884 GO:0036265
Pumo5g02778 446 Gene3D - 100 379 IPR015943 GO:0005515
Pumo5g02778 446 FunFam tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit 14 100 - -
Pumo5g02778 446 Gene3D - 14 99 IPR015943 GO:0005515
Pumo5g02778 446 SMART WD40_4 49 87 IPR001680 GO:0005515
Pumo5g02778 446 SMART WD40_4 90 128 IPR001680 GO:0005515
Pumo5g02778 446 SMART WD40_4 184 235 IPR001680 GO:0005515
Pumo5g02778 446 SMART WD40_4 135 174 IPR001680 GO:0005515
Pumo5g02778 446 Pfam WD domain, G-beta repeat 143 172 IPR001680 GO:0005515
Pumo5g02778 446 Pfam WD domain, G-beta repeat 58 87 IPR001680 GO:0005515
Pumo5g02778 446 Hamap tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit <gene_name> [WDR4]. 24 438 IPR028884 GO:0036265
Pumo5g02778 446 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 55 90 - -
Pumo5g02778 446 ProSiteProfiles Trp-Asp (WD) repeats profile. 55 96 IPR001680 GO:0005515
Pumo5g02778 446 SUPERFAMILY WD40 repeat-like 18 300 IPR036322 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02778 K15443 - gmx:100786310 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02778 5 74700038 74702511 Pumo5g02778 5 74700038 74702511 ECH