LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pumo5g02758	ATGAGTGTTCAGCTATCAAGTTTATGGGTCCCCAACTCTCCACCAATTCCCACACACTTCGTTCCCAACCGTGGCAGATTCTCAGCATCAGCTCTCTCATCCCAATCTCCCACTATTCAGATAATTGGTGTGGGAGGCCCCAGTTGGAGGGATAATAATGGATATGGCAATCCCAACAGCAACTTATTTGATGGGTGCCAAGGAGAGAGTGATCATTGGAGTGAGCTTGACACTGATCTTTATCACTGGACAAAGGCATTGCGCCCTGTGCAGTGGTTTCCTGGTCATATAGCAAAAGCAGAAAAAGAACTGAAGGAGCAGCTCAAGTTGATGGATGTTGTCATAGAAGTGCGGGATGGACGAATTCCTATGTCCACAAGTCATCCACAGATGGATCTATGGCTTGGAAATAGAAAGAGAATCTTGGTTTTAAATAGAGAAGACATGATATCAACTGCAGATCGCAATGCTTGGGCAGATTATTTTACTAGGAATGGCACAAAGGTTGTCTTCTCCAATGGGCAGCTTGGAATGGGAACGATGAAGCTAGGCCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAGCGTAGAGCCAAAGGGCTACTTCCTCGTGCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGATCAACCGTTTGTTAAAGCGAAGAATGTGCCCAGCAGCTCCTAGGCCAGGAGTCACAAGAGCATTGAGGTGGGTTCGTTTTGGGAAAGATCTTGAACTGCTGGATTCTCCTGGGATACTCCCAATGCGAATCAGTGATCAGTCAGCTGCTATAAAACTCGCCATATGTGATGACATTGGAGAGAGGTCCTATGATGTGGCCGATGTTGCTGCAATTCTTGTGCAGATGCTTACAAAGCTTCCCACAGTAGGCAGAGATGTTCTTTGTAAACGATACAAGATTGATGTAGATAGTCCAGATGGTAAAATATTCATAGAGAAGCTTGCAGTTCGAGTATTTAATGGAGATGCTAATCAGGCAGCATTTCGTGTTCTAGCAGATTTTAGAAAAGGCAAGTTTGGTTGGACTGCACTGGAGAGGCCTCCTAGGTGA	1101	0.4505	MSVQLSSLWVPNSPPIPTHFVPNRGRFSASALSSQSPTIQIIGVGGPSWRDNNGYGNPNSNLFDGCQGESDHWSELDTDLYHWTKALRPVQWFPGHIAKAEKELKEQLKLMDVVIEVRDGRIPMSTSHPQMDLWLGNRKRILVLNREDMISTADRNAWADYFTRNGTKVVFSNGQLGMGTMKLGRLAKELAADVNVKRRAKGLLPRAVRAGIVGYPNVGKSSLINRLLKRRMCPAAPRPGVTRALRWVRFGKDLELLDSPGILPMRISDQSAAIKLAICDDIGERSYDVADVAAILVQMLTKLPTVGRDVLCKRYKIDVDSPDGKIFIEKLAVRVFNGDANQAAFRVLADFRKGKFGWTALERPPR	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pumo5g02758	366	PANTHER	MITOCHONDRIAL RIBOSOME-ASSOCIATED GTPASE 1	78	365	-	-
	Pumo5g02758	366	FunFam	Mitochondrial GTPase 1	268	356	-	-
	Pumo5g02758	366	Pfam	50S ribosome-binding GTPase	210	298	IPR006073	GO:0005525
	Pumo5g02758	366	Gene3D	-	90	263	IPR027417	-
	Pumo5g02758	366	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	96	332	IPR027417	-
	Pumo5g02758	366	NCBIfam	ribosome biogenesis GTPase YlqF	90	362	IPR019991	-
	Pumo5g02758	366	FunFam	DAR GTPase 3 chloroplastic	90	263	-	-
	Pumo5g02758	366	CDD	Ras_like_GTPase	211	339	-	-
	Pumo5g02758	366	Gene3D	-	268	356	IPR023179	-
	Pumo5g02758	366	PRINTS	GTP1/OBG GTP-binding protein family signature	256	271	IPR006073	GO:0005525
	Pumo5g02758	366	PRINTS	GTP1/OBG GTP-binding protein family signature	210	230	IPR006073	GO:0005525
	Pumo5g02758	366	CDD	YlqF	92	263	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pumo5g02758	Pumo-Chr5	74337365	74340949	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pumo5g02758	K19828		-	gmx:100784201	704.901