Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02731 ATGGCAAGTCTCGCGCCACGCTTCTCATTCTCAGTGATTCCTCGGAATCACCACAAACCCAAATGCTCTTGTTTCCATAAACCCTTTATCCAAAGGAAGCACCTTCAGCACCAACTTGGATTGCAAAACCCCGTTTTCCCCTTTTCCCATAACCCCACTTCTTCTTCAAAATTGTGTGCCACGTCACGGTTGTCCATTGAGGAAACGGAGCAGCAAGTCGGAGGAACCTTGACCCGACCCGAAGATCTAAAAGGGTCGTTGGCGTATCTGTTTAGGACTGAAACTGGTGGCGGGTTGGTGAAAGTTTATGTCACAAAGAGAAAAGATAGGTATTGTGTTTACATTGAGATTTCTTCGTTGGATATAAGTGGTGGTGTGGGTGAAACGCTTTTGGTGTGTTGGGGTGTGTATAGAAGTGATTCATCGTGTTTTGTGGATCTGGATTCGAGTGGTTTGAGTGAAAATGCGGCAACGGGGATGAATGTTAGTCCCTTGGTGCAAACTTCTGACGGGAAGTTTGCAGTTGAATTGGAATTTGATGCCAAATATGTTCCCTTGTACTTGTCGTTTTTCTTGATGTCGTCTTTGGATGCAGGGTTGGAGATCAGAAGCCATAGGAGAACGAATTTTTGCGTGCCGGTTGGGTTGCTTCCGGGATACCCGGGTCCTTTGGGGGTCTCTTATTCTCCTGATGGGTCTGTGAATTTTGCTATTTTCTCTAGGCATGCTGAGAGTGTGGTTTTGTGCTTGTATGATGAGAATGGTGTGGAGAAGCCTGCTTTGGAGCTTGATTTGGATCCTTATGTGAATAGGACAGGTGGTATCTGGCATGTCTCGTTTGAGAGTGCCAAGGGTTTTGTGAGCTACGGTTATCGCTGCAGAGGGGGTGTTCTTAAGAAGAACAAGGATGATGGTTTTGCTGAGCTTGTTGTTTTGGATCCGTATGCTAAGATTGTTGGGAATTCTTATCCTGATGGTCTTGGATTAGTGAAGAATCTTGGATGGTTGGGGAAGGAACCTGCTTTTGACTGGGGTGATGATCGTCATCTGGATTTGTCCATGGAGAAACTAGTGGTTTATAGGTTGAATGTGAAGAGCTTTACGCAGCACGAGTCCAGCCAACTTCCGAGTGGTTTAACTGGGACCTTTACTGGTTTGGCTAAGAAGGTGCAGCATTTTAAAGATCTAGGTGTGAATGCTGTTCTGCTGGAGCCAGTTTTCACGTTTGATGAGAAAAAGGGACCATATTTTCCTTGCCACCTTTTCTCTCTGATGCACATTTATGGACCATCTGGTGGTCCTGTATCTGCCATTGCCTCTATGAAAGAGATGGTTAAAACTATGCATGCCAATGGGATAGAAGTTCATGTGGAAGTTGTTTTCTCCAATACTGCTGAGATTGGTGCTCTACAGGGAATTGACGACTTGTCCTACTATTATGCAAATGGAGTTGGTGATTTGAAGATACAGAGTGCTTTGAACTGTAACTATCCTATAGTTCAAAATTTGATTCTGGATAGTCTTCGGCGTTGGGTGACTGAGTTTCACATTGATGGCTTCTCTTTCATAAATGCTTCACACCTGCTGAGGGGATTTCATGGGGAGTACTTGTCTCGACCTCCATTAGTTGAAGCAATTGCTTTTGATCCAGTACTCTCCAAGACTAAAATTATTGCAGATTGTTGGGATCCCCATGACATGGTAGCAAAGGAAATTCGCTTTCCTCATTGGATGAGATGGGCTGAAATAAATACAAATTTTTGTAATGATGTGAGGAACTTCTTAAGGGGTGAAAATCTTCTTAGCGACCTTGCAACAAGACTCTGTGGGAGTGGGGACATTTTTTCTGGTGGACGAGGCCCAGCATTCTCTTTTAATTACACTGCCAGAAATTTTGGACTTTCTCTTGTGGACTTGGTTAGCTTCAGCAGTGCGGATGAATTAAGTTGGAATTGTGGAGAAGAAGGACCTACTAACAACACCGCTGTCCTTGAAAGACGACTCAAACAAATCCGTAATTTCCTCTTCATCTTGTTTGTATCATTAGGAGTACCTGTTCTGAACATGGGAGATGAATGTGGCCAGTCTTCTGGTGGTTCTCCTGCATATGATGATATAAAGCCTTTCAATTGGAGTGCTTTGAAAACAGGCTTTGGTAAACAAACCTCACAATTCATTTTCTTTTTAAGTTCATTGAGAAGGAGGAGGAGTGATCTTCTTCAGAGGAGGAGCTTCTTAAAAGAAGAAAACATTGAATGGTATGGAAGTGATGGGGCTCCACCAAGATGGGAAGACCCATCCTGCAAGTTCCTGGCCATGGCTTTGAAGGCTGAAAAAACGGAGTTTCTAGAGAGCTCTGTATCTTCTGACACATCTGGGGATCTATTTATTGTTTTCAATGCAGCTGATCATCCAGAAGCTGCAGTTTTACCCCCACCTCCAGAAGGAATGTCATGGTACCGTTTAGTTGACACGGCTCTTCCATTTCCCGGCTTTTTCTCAACCAGTGGTGAAGTTGTCCCTGAGCAGACAGCAGGTTTGTTTACTTATCAAATGAAGTCTTACAGCTGCGGTTTGTTTGAAGCAATACTTTCCCCAGTCCACGACTTCCCTCAACCTTTGTAA 2625 0.44 MASLAPRFSFSVIPRNHHKPKCSCFHKPFIQRKHLQHQLGLQNPVFPFSHNPTSSSKLCATSRLSIEETEQQVGGTLTRPEDLKGSLAYLFRTETGGGLVKVYVTKRKDRYCVYIEISSLDISGGVGETLLVCWGVYRSDSSCFVDLDSSGLSENAATGMNVSPLVQTSDGKFAVELEFDAKYVPLYLSFFLMSSLDAGLEIRSHRRTNFCVPVGLLPGYPGPLGVSYSPDGSVNFAIFSRHAESVVLCLYDENGVEKPALELDLDPYVNRTGGIWHVSFESAKGFVSYGYRCRGGVLKKNKDDGFAELVVLDPYAKIVGNSYPDGLGLVKNLGWLGKEPAFDWGDDRHLDLSMEKLVVYRLNVKSFTQHESSQLPSGLTGTFTGLAKKVQHFKDLGVNAVLLEPVFTFDEKKGPYFPCHLFSLMHIYGPSGGPVSAIASMKEMVKTMHANGIEVHVEVVFSNTAEIGALQGIDDLSYYYANGVGDLKIQSALNCNYPIVQNLILDSLRRWVTEFHIDGFSFINASHLLRGFHGEYLSRPPLVEAIAFDPVLSKTKIIADCWDPHDMVAKEIRFPHWMRWAEINTNFCNDVRNFLRGENLLSDLATRLCGSGDIFSGGRGPAFSFNYTARNFGLSLVDLVSFSSADELSWNCGEEGPTNNTAVLERRLKQIRNFLFILFVSLGVPVLNMGDECGQSSGGSPAYDDIKPFNWSALKTGFGKQTSQFIFFLSSLRRRRSDLLQRRSFLKEENIEWYGSDGAPPRWEDPSCKFLAMALKAEKTEFLESSVSSDTSGDLFIVFNAADHPEAAVLPPPPEGMSWYRLVDTALPFPGFFSTSGEVVPEQTAGLFTYQMKSYSCGLFEAILSPVHDFPQPL 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02731 874 Coils Coil 729 749 - -
Pumo5g02731 874 Gene3D - 749 866 IPR013780 -
Pumo5g02731 874 CDD AmyAc_plant_IsoA 353 741 IPR044096 GO:0019156|GO:0019252
Pumo5g02731 874 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 223 316 IPR004193 GO:0004553|GO:0005975
Pumo5g02731 874 CDD E_set_GDE_Isoamylase_N 223 361 IPR044505 -
Pumo5g02731 874 SUPERFAMILY E set domains 218 349 IPR014756 -
Pumo5g02731 874 Gene3D Immunoglobulins 209 327 IPR013783 -
Pumo5g02731 874 SUPERFAMILY Glycosyl hydrolase domain 748 862 - -
Pumo5g02731 874 SMART aamy 361 736 IPR006047 GO:0005975
Pumo5g02731 874 Gene3D Glycosidases 338 748 - -
Pumo5g02731 874 PANTHER GLYCOGEN DEBRANCHING ENZYME 182 862 - -
Pumo5g02731 874 SUPERFAMILY (Trans)glycosidases 340 739 IPR017853 -
Pumo5g02731 874 Pfam Alpha amylase, catalytic domain 381 465 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02731 Pumo-Chr5 73971412 73974380 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02731 56 863 Glycoside Hydrolase AT1G03310 58.415 0.0 936
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02731 K01214 - gmx:100777953 1551.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02731 5 73971412 73974380 Pumo5g02731 5 73971412 73974380 ECH