Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02706 ATGAAGCGAGTGTGGAGGTTCTCCTCAGACGCAACGCGAACTCAGTCGTTGCTCTTCCAATCCCTTCATTTCCATGGATTCTCAAACCCCAAAACCATTCCCTTCTTCTTCTTCGCCACCGCTCGCAAGCTCAATACGGTGTCAAACAAGGTCGCTGACCTCATTCCCTTGTTCACTGCCAAGACTTGCTCTTCACCCAAAGAGGATCTCAACAATAAAGTCACCATTCTCAAGAACGAGCTCGTTCGGGAATCCTCGGACTCTGCTAGGGTTCACAGCATTTTGGACGATTATTCTGACTCTTTGAATCGGCGTCACCCCGCTGGATCTGTGTTGATCATGCTTATGAATCAATTGAATTCAAATCCTTCCCTTGCCCTCCAGGTGTTTAGTTGGAGAAGAAAGAGATCTAATGTTGAAAACCCTATGGATGCGTATGAGTACGCAAAGGGTATAAAAGCTGCAGGTAGATCTGGTAATGTTGACTTAGCTGTTAAGCTCTTTAAGGAGGCTGCTGTCAAAGGTATCAAGACGACCAGCACTTACAACGCGCTAATGGGCGCTTTTATGTTCAATGGTCTTGCCGATAGCTGCCAGTCCTTGTTTTGTGATTTGAAGAGGGATCCAACTTGCGATCCTTCTATTGCCACGTACAATATTCTTCTATCTGTTTTTGGTGGCTTGATGCTGGTTGATCACATGGAAGCAACATTCAGTGAGATACAAACTTTAAACCTCTCCATGAACGTCAGCACTTACAATCACTTGATTGCTGGATATATCACAGCTTGGATGTGGGATGATATGGAAAAGGTGTTTCAAATGTTGAAGTCGGGCCCTGTCAAGCCTAACATGAAAACCTACCTGCTGATGCTTCGTGGGTATGCAAATTCGGGTAATCTGGAAAAGATGGAAGAGATATATTCCTTTATAAAGGATCATGTTAATAAAAAAGAAATTTCATTAATCAGATGTATGATATGTGCCTATTGCAGAAGTTCTGAAGCAGATAGACTTAAGAAGATAGAGTTATTGTTGAAGTTTATTCCAGAAAAAGAGTACAGGCCATGGTTAAATGTTTTGTTGATTAAACTCTATGCCAAGGAAGACTGGTTAGAGAAAATGGAGAATGCTATAAATGAGGCATTTGAGCATGAAACCTCTATAACAACCAAGGGTATTTTGAGATGCATAGTTGCAACTTATTATCGGTGCAATGCAGTAGAAAAGCTAGAAAAGTTTGTGAGACGTGCTGAAATCTCTGGGTGGAGTATCTGCCGATCCTTATATCATTGTAAGCTAGTCATGTATGGGTCACAGAAGCCCTTATACGAAATGCATAATGTCCTTGAGGAGATGGAAAACGTCAAGCTTGATCGCACAAAGAAAACATTATGGATAATGTACAAAGTTTACATGAGCCGTGGCCAGAGTTCCATGGGTTTAAAAACATTGGGGCAAATGTTCAAGCATGGTTATGAAGTTCCTTTGGGTGCATTTCCATCATGA 1509 0.4188 MKRVWRFSSDATRTQSLLFQSLHFHGFSNPKTIPFFFFATARKLNTVSNKVADLIPLFTAKTCSSPKEDLNNKVTILKNELVRESSDSARVHSILDDYSDSLNRRHPAGSVLIMLMNQLNSNPSLALQVFSWRRKRSNVENPMDAYEYAKGIKAAGRSGNVDLAVKLFKEAAVKGIKTTSTYNALMGAFMFNGLADSCQSLFCDLKRDPTCDPSIATYNILLSVFGGLMLVDHMEATFSEIQTLNLSMNVSTYNHLIAGYITAWMWDDMEKVFQMLKSGPVKPNMKTYLLMLRGYANSGNLEKMEEIYSFIKDHVNKKEISLIRCMICAYCRSSEADRLKKIELLLKFIPEKEYRPWLNVLLIKLYAKEDWLEKMENAINEAFEHETSITTKGILRCIVATYYRCNAVEKLEKFVRRAEISGWSICRSLYHCKLVMYGSQKPLYEMHNVLEEMENVKLDRTKKTLWIMYKVYMSRGQSSMGLKTLGQMFKHGYEVPLGAFPS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02706 502 Coils Coil 67 87 - -
Pumo5g02706 502 Pfam PPR repeat family 178 223 IPR002885 -
Pumo5g02706 502 Pfam PPR repeat family 249 297 IPR002885 -
Pumo5g02706 502 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 249 283 IPR002885 -
Pumo5g02706 502 Gene3D Tetratricopeptide repeat domain 72 244 IPR011990 GO:0005515
Pumo5g02706 502 Gene3D Tetratricopeptide repeat domain 245 318 IPR011990 GO:0005515
Pumo5g02706 502 Pfam PPR repeat 152 175 IPR002885 -
Pumo5g02706 502 PANTHER EXPRESSED PROTEIN 24 500 IPR044179 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02706 148 374 Miscellaneous Gene Families AT4G11690 23.043 2.05e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02706 - - gmx:100792116 837.025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02706 5 73614589 73618085 Pumo5g02706 5 73614589 73618085 ECH