Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02565 ATGAGTGTTTTACCTCGTCTTCATATCTTCGCTAGGCCTTTACTCTCCTCCTCTCTCCTCTCCCCCTTCTGCCAGAATGGAGGTAGAGAAATAATGACCAGGATTGGCATGAAAACCTGCTCTCTTTCTTCTGCAGCTGAAGCTTCAGATTTAGAATGTGATGTGACCCATGATGATGTCAAAGCAGCAGAGAAAGATGATGCACTTTGCTTGGCTGTCTCACAGCTTGCTAGCGAGTTTAGCAAGGAATCTATGTTATCTCTGCAGAAGTTTTTTGGTGTACGCCGTGCTCGTGTGATATCTACAGGCTCCTTGAAGCTTGACCTAGCTCTGGGAATTGGAGGATTGCCAAAGGGTAGGATTGTGGAAATTTATGGACGAGAAGCAGCTGGCAAGACTACACTTGCACTTCAAATTATTAAAGAAGCTCAAAAGCTTGGAGGATATTGTGCATATCTTGATGTAGAAAATGCATTGGACTTCTCACTTATGGAATCGATGGGCGTAGATACTGAAAACCTTCTTATATCACATCCAGATTGTGCTGAAAATTTGTTAAGCATGGTTGATACATTAACAAAAAGTGGTGCTGTAGATGTGATTGTGATTGATAGTGTTGCTGCCCTCGTCCCCCAATGTGAACTTGATCAATTAGGAGTTAGCACTAATCGAGATTTACAATCACGAATGATGACTCGAGCACTGCGGAAAATTCACTATTCATTATCTCACTCTCAAACTCTCATTGTTTTCATTAATCAGATTAGATTGAGTCCAAAATCAGTCCAGAAATGGGGACCTGTGGAAGAAGTCACTTGTGGTGGAAATGCCTTGAGATTCTATGCAGCTGTTCGTTTGAGACTTTCAAGAATGAGATTGATCAAAACTGAGGATAAGGTAGAGGGTGTTCTGATCTGTGCGGAAGTGGTAAAAAACAAACTAGCACCAGCAGCAACGAAAAGGGCTGAACTGGGTATCAAGTTTGGAAGAGGCTTTTGCCATGAGTCAGATGTCTTAGATTTGGCTTGTGAACATGGAATCATTGTGAAAGATGAGGGAAGCTACTTTATTGAAGGGAGCAGTTTTGATAGTAGAGAAGCAGCTGAACTGTTTTTGGCTCAAAATGATGCAGTTTGTGACAAGTTGATTAGGGATATGAGAAGACTTTATTTTTAA 1176 0.4141 MSVLPRLHIFARPLLSSSLLSPFCQNGGREIMTRIGMKTCSLSSAAEASDLECDVTHDDVKAAEKDDALCLAVSQLASEFSKESMLSLQKFFGVRRARVISTGSLKLDLALGIGGLPKGRIVEIYGREAAGKTTLALQIIKEAQKLGGYCAYLDVENALDFSLMESMGVDTENLLISHPDCAENLLSMVDTLTKSGAVDVIVIDSVAALVPQCELDQLGVSTNRDLQSRMMTRALRKIHYSLSHSQTLIVFINQIRLSPKSVQKWGPVEEVTCGGNALRFYAAVRLRLSRMRLIKTEDKVEGVLICAEVVKNKLAPAATKRAELGIKFGRGFCHESDVLDLACEHGIIVKDEGSYFIEGSSFDSREAAELFLAQNDAVCDKLIRDMRRLYF 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02565 391 Gene3D - 95 388 IPR027417 -
Pumo5g02565 391 CDD RecA 99 334 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 PANTHER RECA 43 389 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 SMART AAA_5 118 292 IPR003593 GO:0016887
Pumo5g02565 391 ProSiteProfiles RecA family profile 2. 265 337 IPR020587 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pumo5g02565 391 ProSitePatterns recA signature. 277 285 IPR020584 GO:0003677|GO:0005524|GO:0006259|GO:0008094
Pumo5g02565 391 ProSiteProfiles RecA family profile 1. 96 255 IPR020588 GO:0003677|GO:0005524|GO:0006281|GO:0140664
Pumo5g02565 391 PRINTS RecA protein signature 226 255 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 PRINTS RecA protein signature 308 337 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 PRINTS RecA protein signature 154 183 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 PRINTS RecA protein signature 361 378 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 PRINTS RecA protein signature 274 302 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 PRINTS RecA protein signature 188 217 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 Pfam recA bacterial DNA recombination protein 68 332 IPR013765 GO:0003697|GO:0005524|GO:0006281
Pumo5g02565 391 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 320 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02565 Pumo-Chr5 70552237 70558251 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02565 - - gmx:100777423 674.085