Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02548 ATGAAGCTCATTAGTAGCATCAACCCCAAAAACCTTAAACTCAGCCCCAAACGCCTCTTCCGCAAAAAGGAGCGTTCTTTAGTCTCCCGCTCCGACCCGCCCTCATTCGGATCCGGATCCGGATCCTCGTCTGATGACTCCTCCACCACCACCACCCACAAGCCCGCCGCTGCCGGCTCCCAAACCCCCACCAGCGTCCTCCCGGACGTCTCCGGCGAGTGGTCCGACGTCGCCACCGTCGACGTCGTCCGGTGGGACCTCGCCCAGGCCTTCCGCCTCATCGACCGCGACAACGACGGCGTCGTCTCGCGGCAGGACCTCGAGGCCCTCCTCACGCGCCTCGGCGCGTCCGACGTCTCCCTCATGCTCAGCGACTTCGACAACGAAGGCGACGGCTACATCACCATCGAGTCCCTCACGAGCCACCTCGGGTCGGGTCTCGAATCCGGGTCGGATCCCGACGAGCTGAAGGAGGCTTTCGAGGTGTTCGACACGGATCGCGACGGGAGGATCTCGGCTGAGGAGCTGCTCAGGGTCTTCAGAGCCATCGGCGACGAGCGGTGCACGTTAGAGGAGTGCCGGCGCATGATAGAGAGCGTGGACAGGAACGGGGACGGGTTCGTCTGCTTCGAGGACTTCTCGCGTATGATGGAGCTGCAGCAGCAGCAACGGTGA 675 0.637 MKLISSINPKNLKLSPKRLFRKKERSLVSRSDPPSFGSGSGSSSDDSSTTTTHKPAAAGSQTPTSVLPDVSGEWSDVATVDVVRWDLAQAFRLIDRDNDGVVSRQDLEALLTRLGASDVSLMLSDFDNEGDGYITIESLTSHLGSGLESGSDPDELKEAFEVFDTDRDGRISAEELLRVFRAIGDERCTLEECRRMIESVDRNGDGFVCFEDFSRMMELQQQQR 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02548 224 ProSiteProfiles EF-hand calcium-binding domain profile. 86 117 IPR002048 GO:0005509
Pumo5g02548 224 FunFam Probable calcium-binding protein CML35 139 224 - -
Pumo5g02548 224 Gene3D - 83 141 - -
Pumo5g02548 224 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Pumo5g02548 224 MobiDBLite consensus disorder prediction 15 69 - -
Pumo5g02548 224 ProSiteProfiles EF-hand calcium-binding domain profile. 151 186 IPR002048 GO:0005509
Pumo5g02548 224 SMART efh_1 155 183 IPR002048 GO:0005509
Pumo5g02548 224 SMART efh_1 86 114 IPR002048 GO:0005509
Pumo5g02548 224 SMART efh_1 192 220 IPR002048 GO:0005509
Pumo5g02548 224 SMART efh_1 118 146 IPR002048 GO:0005509
Pumo5g02548 224 Pfam EF-hand domain 87 115 IPR002048 GO:0005509
Pumo5g02548 224 SUPERFAMILY EF-hand 86 219 IPR011992 -
Pumo5g02548 224 CDD EFh 155 217 IPR002048 GO:0005509
Pumo5g02548 224 ProSitePatterns EF-hand calcium-binding domain. 164 176 IPR018247 -
Pumo5g02548 224 ProSiteProfiles EF-hand calcium-binding domain profile. 188 223 IPR002048 GO:0005509
Pumo5g02548 224 ProSitePatterns EF-hand calcium-binding domain. 201 213 IPR018247 -
Pumo5g02548 224 Gene3D - 142 224 - -
Pumo5g02548 224 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 155 218 - -
Pumo5g02548 224 MobiDBLite consensus disorder prediction 31 69 - -
Pumo5g02548 224 Pfam EF-hand domain pair 155 217 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02548 Pumo-Chr5 70168781 70170324 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02548 10 221 EF-hand Containing Proteins AT3G10190 53.211 6.57e-61 188
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02548 K13448 - gmx:100815559 318.931
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02548 5 70168781 70170324 Pumo5g02548 5 70168781 70170324 ECH