Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02541 ATGTTTTCTTCTGCAATTTCTCTGAAGCCCTTCCTTCAGTCCCTCCTCATTGATCGTTACGCTCAGAGCACGACTGCTGCAACCAGGTGGGAGTGCTTGGGGTTTAACAAGTCAGAAAATTTCAGTACCAAGAGAGTGTTGTGTGCTGAGGGGTTCAAGTTGAATTGCTTGGTTGATAATACAGAGATGGATGTGGAGTCATCATCATCATCATCTTTGGTGGATGATGCTGCCATGAGCTTAAGTGAAGAGGATTTAGGGGAGCCTAGTATTTCAACATTGGTGATGAATTTCGAGAACAAGTTTGATCCTTTTGGAGCAATTAGTGTCCCGCTATACCAAACGGCTACTTTTAAGCAGCCTTCTGCAATAGAAAACGGTCCCTATGACTATACCAGAAGTGGAAATCCTACTCGAGATGCTTTAGAAAGTTTACTAGCAAAACTTGATAAAGCAGATAGAGCCCTGTGCTTCACCAGCGGAATGGCTGCTTTGGCTGCTGTTGTTCGTCTTGTTGGAACTGGTGAGGAAATTGTTGCTGGAGATGATGTATATGGTGGCTCAGATAGGTTGCTGTCTCAAGTAGTTCCAAGGACTGGAATTGTGGTGAAACGGGTAAATACAACTGATCTAAATGAGGTTGCATCTGCCATTGGACCCAGGACTAAGCTTGTGTGGCTTGAGAGTCCAACCAATCCTCGGCTACAAATTTCTGATATTCGAAAAATATCAGAGATGGCTCATTCACATGGTGCTCTTGTGTTAGTGGACAATAGTATAATGTCACCTGTGTTGTCTCGGCCATTGGAACTTGGAGCAGATATTGTCATGCACTCAGCTACAAAATTTATTGCTGGACATAGTGACATTATGGCTGGTGTGCTTGCTGTGAAGGGTGAAAAGTTGGGAAAGGAATTGTATTTCTTGCAAAATGCAGAGGGTTCAGGCTTAGCTCCATTTGACTGTTGGCTTTGTTTGCGAGGAATCAAGACAATGGCCCTGCGAATTGAAAAGCAACAGGATAATGCACAGAAGATTGCTGAGTTCCTTGCCTCCCATCCTCGAGTGAAGAAAGTGAATTATGCTGGCTTGCCTGGTCATCCTGGTCGTGATTTACACTATTCTCAGGCAAAGGGTGCAGGATCTGTGCTTAGCTTCTTGACTGGTTCATTGGCACTTTCAAAGCATATTGTTGAAACTACTAAATACTTCAGTATAACCGTCAGCTTTGGGAGTGTGAAGTCCCTTATTAGCATGCCTTGCTTTATGTCACATGCAAGCATACCTGCTGCAGTTCGTGAGGCCAGGGGTTTAACTGAAGATCTTGTACGTATATCTGTGGGAATTGAGGATGTGAATGATCTCATTGCTGATCTAGACAATGCACTTAGAACTGGGCCTCTTTAA 1407 0.4385 MFSSAISLKPFLQSLLIDRYAQSTTAATRWECLGFNKSENFSTKRVLCAEGFKLNCLVDNTEMDVESSSSSSLVDDAAMSLSEEDLGEPSISTLVMNFENKFDPFGAISVPLYQTATFKQPSAIENGPYDYTRSGNPTRDALESLLAKLDKADRALCFTSGMAALAAVVRLVGTGEEIVAGDDVYGGSDRLLSQVVPRTGIVVKRVNTTDLNEVASAIGPRTKLVWLESPTNPRLQISDIRKISEMAHSHGALVLVDNSIMSPVLSRPLELGADIVMHSATKFIAGHSDIMAGVLAVKGEKLGKELYFLQNAEGSGLAPFDCWLCLRGIKTMALRIEKQQDNAQKIAEFLASHPRVKKVNYAGLPGHPGRDLHYSQAKGAGSVLSFLTGSLALSKHIVETTKYFSITVSFGSVKSLISMPCFMSHASIPAAVREARGLTEDLVRISVGIEDVNDLIADLDNALRTGPL 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02541 468 ProSitePatterns Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 274 288 IPR000277 GO:0019346|GO:0030170
Pumo5g02541 468 NCBIfam cystathionine beta-lyase 92 465 IPR006238 GO:0004121|GO:0071266
Pumo5g02541 468 SUPERFAMILY PLP-dependent transferases 98 464 IPR015424 -
Pumo5g02541 468 CDD CGS_like 106 464 IPR000277 GO:0019346|GO:0030170
Pumo5g02541 468 PANTHER TRANS-SULFURATION ENZYME FAMILY MEMBER 90 464 IPR000277 GO:0019346|GO:0030170
Pumo5g02541 468 Gene3D Aspartate Aminotransferase, domain 1 332 465 IPR015422 GO:0003824
Pumo5g02541 468 Pfam Cys/Met metabolism PLP-dependent enzyme 93 463 IPR000277 GO:0019346|GO:0030170
Pumo5g02541 468 Gene3D - 90 331 IPR015421 GO:0003824
Pumo5g02541 468 FunFam Cystathionine gamma-synthase homolog 89 331 - -
Pumo5g02541 468 FunFam Cystathionine beta-lyase 332 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02541 Pumo-Chr5 69967449 69974186 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02541 K01760 - gmx:100812354 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02541 5 69967449 69974186 Pumo5g02541 5 69967449 69974186 ECH