Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02538 ATGGCAGAGAATGGGTTGGAGTGGGTGAGAGTGGGAGGGGAAGAAGAAGAAGCGAAAGGGTGTCTGAGCAAGTTCGTGGATAATGGCAGCGTGGAGAGTCACAGATACTACTTGTCTCGCAGAACCACTCTCGAAATGCTCAAAGACAGAGGCTACTCCATACCCTCTCACGAAATCGACCTTTCTCTCTCCGATTTCCGCGACTTGCATGGCCAATCCCCCGACCCTGATCGCCTTCGCCTCTCCCTCACTCATGCCACCAACTCTTCCAAAAGGGTTTTAGTCATTTTCTGTGGGCCGGGTGTTGTGAAAGTTACTGCCATTCGGAACATTGCGGGGCAGATTGTTAATAGAGACACTTTGACTGGCCTCATATTGATAGTGGAAAATCATATTACTAGCCAGGCCTTGAAAGCAGTCAATCTTTTCTCCTTCAAGGTTGAAATTTTCCAGATCACAGACTTGCTTGTTAATATTACAAAGCATGTATTGAAGCCAAAGCATCAGGTGCTGACTGATAAGCAGAAGAAAAATCTCCTGAAAAAGTACAATATTGAAGAAAAGCAGCTTCCCCGCATGCTACAGACAGATGCAATTGCACGGTATTATGGACTTGAGAGGGGCCAAGTAGTTAAAGTTACCTATAGTGGTGAAGTCACCCAGATGCATGTCACATATCGATGTGTTTGGTGA 693 0.4603 MAENGLEWVRVGGEEEEAKGCLSKFVDNGSVESHRYYLSRRTTLEMLKDRGYSIPSHEIDLSLSDFRDLHGQSPDPDRLRLSLTHATNSSKRVLVIFCGPGVVKVTAIRNIAGQIVNRDTLTGLILIVENHITSQALKAVNLFSFKVEIFQITDLLVNITKHVLKPKHQVLTDKQKKNLLKKYNIEEKQLPRMLQTDAIARYYGLERGQVVKVTYSGEVTQMHVTYRCVW 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02538 230 PANTHER DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 30 230 IPR014381 GO:0003899
Pumo5g02538 230 FunFam DNA-directed RNA polymerases I, II, and III subunit RPABC1 155 230 - -
Pumo5g02538 230 SUPERFAMILY RPB5-like RNA polymerase subunit 155 230 IPR035913 -
Pumo5g02538 230 Gene3D - 27 154 IPR036710 GO:0003677|GO:0003899|GO:0006351
Pumo5g02538 230 Gene3D - 155 230 IPR035913 -
Pumo5g02538 230 Pfam RNA polymerase Rpb5, C-terminal domain 157 229 IPR000783 GO:0003677|GO:0003899|GO:0006351
Pumo5g02538 230 SUPERFAMILY Eukaryotic RPB5 N-terminal domain 30 158 IPR036710 GO:0003677|GO:0003899|GO:0006351
Pumo5g02538 230 Pfam RNA polymerase Rpb5, N-terminal domain 32 114 IPR005571 GO:0003677|GO:0003899|GO:0006351
Pumo5g02538 230 PIRSF RPB5 26 230 IPR014381 GO:0003899
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02538 Pumo-Chr5 69908675 69912967 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02538 K03013 - gmx:100306033 437.187
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02538 5 69908675 69912967 Pumo5g02538 5 69908675 69912967 ECH