Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02533 ATGGTACCTATGGATACTTTGCTCAAAACACCTAACAAGCTTGAGTTTTTGCACCCACTTCACGGTTATTCAGAAAAATTGAGCAATTCAGGCTTCTCTAGGGTGCAAAATCAGGATTTTAGGTTTGGTTCCAAGAAACCACTTGTGAGATGGGGTAAATGTGGGGGTTTGAGGGCTAGTAGCAGTGCCCTTTTGGAGCTTGTTCCTGAATTCAAGAAGGAGAATCTGGATTTTGAACTTCCTTTGTATGATTCCTCAAAGGGGGCTGTGGTGGACCTTGCTGTTGTGGGAGGCGGCCCTGCAGGTCTTGCAGTTGCACAGCAGGTTTCTGAGGCAGGGCTTTCAGTTTGTGCCATTGATCCAAACCCTAGGTTGATTTGGCCCAATAATTATGGGGTTTGGGTGGATGAGTTTGAGGCCATGGATTTGCTTGATTGCCTTGACACCACTTGGTCTGGCGCGGTCGTCTTTATCGACGATAAAACGAAGAAGGATCTAGATAGGCCTTATGGTAGGGTCAATAGGAAGCTGCTGAAGTCCAAGATGCTGCAGAAATGCATATCGAATGGCGTCAAGTTTCACCAAGCCAAAGTTATCAAGGTTATTCATGAGGATGCCAAATCTTTGCTGATCTGTAATGATGGTGTCACTGTTCAGGCTACTGTGGTTCTTGATGCAACTGGCTTTTCAAGATGCCTTGTGCAGTATGATAAACCATATAATCCGGGTTACCAAGTTGCTTATGGGATTCTAGCTGAGGTTGATGAACACCCGTTTGATGTAGATAAAATGCTTTTTATGGACTGGAGAGATTCACATCTGGACAATGACATGGAGCTGAAGCAGAGAAATAGTAGGATTCCCACCTTTTTGTATGCAATGCCCTTTTCATCGAATAGGATATTTTTTGAAGAAACTTCTCTTGTGGCACGCCCTGGGTTACGTATGGATGATATACAGGAAAGAATGGTTGCTAGGTTGAAACACTTGGGTATTAGAGTGAAAAGCATTGAAGAAGATGAGCACTGTGTCATTCCAATGGGTGGCCCCCTCCCAGTTCTTCCACAAAGAGTTGTTGGCATTGGCGGTACCGCTGGGATGGTGCATCCTTCAACTGGGTATATGGTGGCAAGGACCCTGGCTGCAGCTCCTATTGTTGCTAATTCTATTGTTCAGTGCCTTGGTTCTGATAGAGGTTTTTCAGGAGGTGAAATATCTGAACAAGTGTGGAAAGATTTATGGCCCATCCAAAGGAGGCGACAAAGGGAGTTCTTCTGTTTTGGTATGGACATCTTACTCAAGCTTGATTTACCAGGCACAAGGAGATTTTTTAATGCATTTTTTGATCTGGAACCTCATTACTGGCATGGATTCTTATCATCAAGACTGTTTCTTCCTGAGCTCCTATTTTTCGGACTCTCTCTATTTTCTTATGCTTCTAATACATCTAGGATAGAGATTATGGCAAAGGGAACTCTTCCTTTGGTAAACATGATCAACAACTTGGTAAAAGATACAGAATAA 1524 0.435 MVPMDTLLKTPNKLEFLHPLHGYSEKLSNSGFSRVQNQDFRFGSKKPLVRWGKCGGLRASSSALLELVPEFKKENLDFELPLYDSSKGAVVDLAVVGGGPAGLAVAQQVSEAGLSVCAIDPNPRLIWPNNYGVWVDEFEAMDLLDCLDTTWSGAVVFIDDKTKKDLDRPYGRVNRKLLKSKMLQKCISNGVKFHQAKVIKVIHEDAKSLLICNDGVTVQATVVLDATGFSRCLVQYDKPYNPGYQVAYGILAEVDEHPFDVDKMLFMDWRDSHLDNDMELKQRNSRIPTFLYAMPFSSNRIFFEETSLVARPGLRMDDIQERMVARLKHLGIRVKSIEEDEHCVIPMGGPLPVLPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANSIVQCLGSDRGFSGGEISEQVWKDLWPIQRRRQREFFCFGMDILLKLDLPGTRRFFNAFFDLEPHYWHGFLSSRLFLPELLFFGLSLFSYASNTSRIEIMAKGTLPLVNMINNLVKDTE 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02533 507 Gene3D - 89 434 IPR036188 -
Pumo5g02533 507 Pfam Lycopene cyclase protein 92 484 - -
Pumo5g02533 507 FunFam lycopene epsilon cyclase, chloroplastic 88 426 - -
Pumo5g02533 507 SUPERFAMILY FAD/NAD(P)-binding domain 91 474 IPR036188 -
Pumo5g02533 507 PANTHER - 60 502 - -
Pumo5g02533 507 NCBIfam lycopene cyclase family protein 92 487 IPR010108 GO:0016117|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02533 Pumo-Chr5 69880466 69882665 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02533 K06443 - gmx:100810895 970.304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02533 5 69880466 69882665 Pumo5g02533 5 69880466 69882665 ECH