Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02519 ATGTGGGCTCTTCGTCGAGCTTCGATTCCTCTCAGGACCCGAGGGTTTAATGTGAGAGCTTCTTGTGTCAAATTAGCGGGAACTAGTTGTGTTGAAGAAGAGAGTGTTATCAATGAATCTCATGGAATAACATATGGTGGATTTTTGTCACCAAAGACACGTTTCCATTCAGGGCATAATGCTCCCCTGAATTTTACTGTGGGGAAACGTGCACTTTCTTCGAGTAGCACGAAAGAGGAGGATGATTTGGAGGATGGGTTTTCCGAGCTGGAGACGCCTGCCGGCGATGGAAACGAAAGTGACAATCTGTTAACTTCTGATGGCGACCTATCGGATGATGGTGAGAAGGAGGATGTTGAGGAGCCACACAATGAGGTTGATGAGGCGGCCAAGGAGAAAGAAAAACCGCGTCGTGGAAGGGTTGAATCGAAGCTATTCAATGAGATCGTGAATGTGCCGGGCACTTCTATTCATTCGGCTCTGGAAAGGTGGTTAGAAGAAGGGAATGAACTAACCAGAGAGGAGGTCTCACTTGCCATGCTTTATCTTCGAAAGCGCAAGATGTTTGTGAGAGCTTTGCAGCTCTCAGAATGGCTTGACTCAAAAAAGGAGTTTGATTTTATTGAAAGAGATTATGCAAGTCGGCTTGATTTAATTGCCAAAGTGCGTGGCTTATATAAGGCAGAGGTTTACATTGAGACTATTCCAGAATCTTGTAGCAGAGAGATAATGTACCGGACTTTATTGACTAACTGCGTCAGTCAGAACAATGTGAAGAAAGCAGAGGAAGTTTTTAGTAAAATGAAGGTTTTGGATTCTCCTGTTACAGTATTTGCTTGCAATCAGTTGCTACTTCTGTATAAGAGGAATGACAAGAAGAAAATAGCTGATGTGTTATTGTTGATGGAAAACGAGAATATCAAACCTTCATCTCTTACTTATTCAATCTTAATAGACACAAAAGGCCAGTCCAAAGATATTGATGGAATGGATCTAATTGTTGATAGAATGAAGGCTCAAGGCATTGAACCGGACATCAAAACTCAGGCTGTTTTGGCTAGGCATTACATCTCAGCTGGGCTTCAAGATAAAGCCGAAACTTTATTGAAGAAGATGGAAGGTGAAAACTTAAAACAGAATCGGTGGCTATGCCGAATTTTGCTTCCCCTCTATGCAAACCTAGGAAAGGTGGATGAAGTGGGAAGAATTTGGAAGGTCTGTGAGACAAACCCTCGGCATGAGGAGTGTCTGGCAGCAATTGAAGCTTGGGGAAAGTTGAATAAAATTGATGAAGCAGAGAAAGTTTTTGAGATGATGGTAAAGAAATGGAAGCTTTCTTCCAAGACCTGCTCCGTACTACTGAAGGTTTATGCAAATAATAAGCTGCTAATGAAGGGTAAGGATCTTATTAAGCGAATGGGAGATGGTGGGTGCCGAATAGGTCCATTGACCTGGGATGCAATAGTGAAACTTTATGTCCAAGCTGGGGAAGTAGAGAAGGCAGACTCTGTTCTTCATAAGGCAGCCCAGCAGAGCCAGATGAAGCCGATATTTTCTACCTACCTAACTATTTTGGAGCAGTATGCTAAGAGGGGTGACATCCATAACTCGGAAAAGATTTTCTTTAGAATGAAACAAGCTGATTATCCATCTAGACCAAAGATGTACCAAGTTCTAATGAATGCCTATATAAATGCAAAGACTCCAGCCTATGGGATTAGGGACAGGTTGAAAGCTGATAGCATATATCCCAATAGAATTTTGGCAAACCAGGTGGTTCAAGTTGATGGATTTAGGAAGAATCCAGTCTCTGATTTGCTTGATTGA 1827 0.4226 MWALRRASIPLRTRGFNVRASCVKLAGTSCVEEESVINESHGITYGGFLSPKTRFHSGHNAPLNFTVGKRALSSSSTKEEDDLEDGFSELETPAGDGNESDNLLTSDGDLSDDGEKEDVEEPHNEVDEAAKEKEKPRRGRVESKLFNEIVNVPGTSIHSALERWLEEGNELTREEVSLAMLYLRKRKMFVRALQLSEWLDSKKEFDFIERDYASRLDLIAKVRGLYKAEVYIETIPESCSREIMYRTLLTNCVSQNNVKKAEEVFSKMKVLDSPVTVFACNQLLLLYKRNDKKKIADVLLLMENENIKPSSLTYSILIDTKGQSKDIDGMDLIVDRMKAQGIEPDIKTQAVLARHYISAGLQDKAETLLKKMEGENLKQNRWLCRILLPLYANLGKVDEVGRIWKVCETNPRHEECLAAIEAWGKLNKIDEAEKVFEMMVKKWKLSSKTCSVLLKVYANNKLLMKGKDLIKRMGDGGCRIGPLTWDAIVKLYVQAGEVEKADSVLHKAAQQSQMKPIFSTYLTILEQYAKRGDIHNSEKIFFRMKQADYPSRPKMYQVLMNAYINAKTPAYGIRDRLKADSIYPNRILANQVVQVDGFRKNPVSDLLD 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02519 608 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 310 344 IPR002885 -
Pumo5g02519 608 NCBIfam pentatricopeptide repeat 244 270 IPR002885 -
Pumo5g02519 608 NCBIfam pentatricopeptide repeat 313 346 IPR002885 -
Pumo5g02519 608 PANTHER OS12G0527900 PROTEIN 71 585 - -
Pumo5g02519 608 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 241 416 - -
Pumo5g02519 608 MobiDBLite consensus disorder prediction 106 122 - -
Pumo5g02519 608 MobiDBLite consensus disorder prediction 70 139 - -
Pumo5g02519 608 SUPERFAMILY TPR-like 344 551 IPR011990 GO:0005515
Pumo5g02519 608 Gene3D Tetratricopeptide repeat domain 416 602 IPR011990 GO:0005515
Pumo5g02519 608 Gene3D Tetratricopeptide repeat domain 240 415 IPR011990 GO:0005515
Pumo5g02519 608 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 417 602 - -
Pumo5g02519 608 Pfam PPR repeat 420 442 IPR002885 -
Pumo5g02519 608 Pfam PPR repeat 519 547 IPR002885 -
Pumo5g02519 608 Pfam PPR repeat 449 478 IPR002885 -
Pumo5g02519 608 Pfam PPR repeat 484 507 IPR002885 -
Pumo5g02519 608 Pfam Pentacotripeptide-repeat region of PRORP 244 404 IPR033443 -
Pumo5g02519 608 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02519 Pumo-Chr5 69598974 69604793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02519 153 547 EF-hand Containing Proteins AT1G02150 25.735 2.29e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02519 - - gmx:100500196 1086.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02519 5 69598974 69604793 Pumo5g02519 5 69598974 69604793 ECH