Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02507 ATGAATAACATTGGTGAAAGACCGCTCAACGGAGATGTAGAGGATGATGATGAGGATGATGGTGGAGGCCTTGAAGCCTGGGAGAGAACTTATGCAGAAGATAGATCATGGGAGGCTTTGCAAGAGGATGAATCTGGGCTTCTTCGCCCCATAGATACTACAGCCATTTACCATGCCCAGTATCGCAGACGCCTTCGTAACCTTGCTGCCACAGCAGCTACTGCACGAATTCAGAAGGGGCTTATACGATACCTATACATTGTTGTTGACCTGTCCAAGGCTGCTTCAGAGAGAGACTTTCGACCAAGTAGGATGGCTGTGATGGCAAAGCAGGTTGAGGCATTTATCAGGGAATTCTTTGATCAGAATCCACTTAGTCATGTTGGTTTGGTGACTATAAAAGATGGGATTGCTCATTGCATAACAGAACTTGGTGGCAGTCCTGAGTCTCACATTAAAGCTTTGATGGGTAAACTGGAATGCTCAGGTGATGCCTCCTTACAAAACGCACTAGAGCTTGTTCTTGGATATCTAAATCAAATCCCATCATATGGTCATCGAGAAGTTCTGATCTTATATTCGGCTCTCAGTACATGTGATCCTGGTGATCTCATGGAAACCATCCAGAAATGCAAAAAGAGTAAAATAAGGTGCTCAGTCATTGGTCTTGCAGCTGAAATGTTTGTGTGCAAACATCTCTGCCAGGAAACTGGAGGGACTTATTCTGTTGCACTAGATGAGTCCCACTTTAAAGAGTTGATCCTAGAGCATGCACCACCACCTCCAGCAATAGCAGAGTATGCTACTGCTAATTTAATTAAGATGGGTTTCCCACAACGATCAGCTGAGGGTTCTGTCGCAATATGCACATGTCATGAAGAGGCTAAGGCTGGAGAGGGATACACTTGTCCAAGATGCAAAGTTCGTGTTTGTGAGCTTCCCACTGAATGTCGTGTCTGTGGACTGACCCTTATTTCTTCACCCCATTTGGCAAGGTCATATCATCATCTATTTCCTATAGTGATGTTTGATGAGGTCACTCCATCTCAAAATGATTCAAGCCGCAGTTTTCTCAATACTTGTTTTGGTTGTCAACAAAGTCTTCTCAGTCAGGGAAACAAGCCTGGACTTTCTGTCATTTGCCCAAAATGCAAACAACAATTCTGCCTTGATTGTGACATCTACATTCATGAGAGCTTACATAACTGCCCAGGCTGCGAGAGTTCCAGGAATTCTAAGTCTGTAACTGTTTCCCAATGA 1260 0.4413 MNNIGERPLNGDVEDDDEDDGGGLEAWERTYAEDRSWEALQEDESGLLRPIDTTAIYHAQYRRRLRNLAATAATARIQKGLIRYLYIVVDLSKAASERDFRPSRMAVMAKQVEAFIREFFDQNPLSHVGLVTIKDGIAHCITELGGSPESHIKALMGKLECSGDASLQNALELVLGYLNQIPSYGHREVLILYSALSTCDPGDLMETIQKCKKSKIRCSVIGLAAEMFVCKHLCQETGGTYSVALDESHFKELILEHAPPPPAIAEYATANLIKMGFPQRSAEGSVAICTCHEEAKAGEGYTCPRCKVRVCELPTECRVCGLTLISSPHLARSYHHLFPIVMFDEVTPSQNDSSRSFLNTCFGCQQSLLSQGNKPGLSVICPKCKQQFCLDCDIYIHESLHNCPGCESSRNSKSVTVSQ 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02507 419 PIRSF TFIIH_SSL1 5 409 IPR012170 GO:0000439|GO:0006289|GO:0006351
Pumo5g02507 419 SUPERFAMILY Cysteine-rich domain 335 407 IPR046349 -
Pumo5g02507 419 SMART C1_4_2 360 408 IPR004595 GO:0006281|GO:0008270
Pumo5g02507 419 SUPERFAMILY vWA-like 79 247 IPR036465 -
Pumo5g02507 419 FunFam General transcription factor IIH subunit 2 78 263 - -
Pumo5g02507 419 PANTHER GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 18 413 - -
Pumo5g02507 419 ProSitePatterns Zinc finger C2H2 type domain signature. 381 401 IPR013087 -
Pumo5g02507 419 SMART VWA_4 82 258 IPR002035 -
Pumo5g02507 419 CDD vWA_transcription_factor_IIH_type 80 262 IPR007198 -
Pumo5g02507 419 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 338 416 IPR013083 -
Pumo5g02507 419 Gene3D von Willebrand factor, type A domain 78 263 IPR036465 -
Pumo5g02507 419 Pfam TFIIH C1-like domain 360 408 IPR004595 GO:0006281|GO:0008270
Pumo5g02507 419 ProSiteProfiles VWFA domain profile. 84 223 IPR002035 -
Pumo5g02507 419 NCBIfam transcription factor ssl1 300 408 IPR012170 GO:0000439|GO:0006289|GO:0006351
Pumo5g02507 419 FunFam General transcription factor IIH subunit 338 414 - -
Pumo5g02507 419 MobiDBLite consensus disorder prediction 1 25 - -
Pumo5g02507 419 Pfam Ssl1-like 88 278 IPR007198 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02507 K03142 - gmx:100803090 807.364