Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02480 ATGATGACAGAGGTGTCGATGTGTAACACCAGCGTCTCTGAGCTGAGTCCGGACGAGGAGAGGATCATGATCAGAGACATTGCTCTCGCTGCCCAAGCTAACAGCAAAGAAGGCGACACCTTCTTCTTAATCACTCAGAGATGGTGGCAACATTGGATTGAATATGTGAACCAAGACCAGACAAACACTTCATATGATGCATCTTCCTTATCAGAACATTGTGATTTGGTCAATTCAACTGCTTTAAAAAGGCCAGCTGGTATTGATAATTCTGATTTGATAGATGATGCTGTGTCAGAGGACTCCGGTATGGGTATTGAGATTCATGATACTCTTTTAGAAGGCCGTGACTATGTATTACTTCCCCAAGAAGTTTGGAACCAATTATTTAGATGGTATGGTGGTGGACCTACATTGGCAAGGAAAGTTATTAGTTCAGGTCTTTCCCAGACTGAATTGGCAGTAGAGGTGTATCCTTTACGGCTTCAATTACTTATGTTGCCAAAAAATGATCGTTTCCCTATAAGAATAAGCAAGAAGGAAACCATTGGACAGCTTCACAGAAAAGCTTGTGAGATATTTGATCTTCCGCCAGACCAAGTGTGTATTTGGGATTACTATGCCCGTCGAAAACATGCTTTGATGAATGACATGGACAAAACTCTCGACGATGCTAATTTACAGATGGACCAAGATATTCTTGTTGAGGTCATCAACAATACAAACAACACAAGTTTTGCTCAAGAAAATGGATCTGCACAGAGGGAAGCGAATTCCGTTCTTGTAGAGCCTTCAAAATCAAGCTTATCAATTGCTGGTGGCTTATCTGCTAGCAGAGGTGCATCTAGAAGCTACAACACGGACCTTTCTTCATCTCAGAACCTAAATTCTCCAGTTAGAGATGTGGAAAACCCTTATGGAACCAGTGGTGTCACCACAAGAGGTTCATTCGGTGGTCTCACGGGGTTGCTGAATCTTGGCAATACTTGTTACATGAATAGTGCAATACAGTGCCTTGTTCACACACCGGAATTTGCTAGGTACTTCAGGGAAGACTATCATCGAGAGATAAATTGGCAAAATCCATTGGGCATGGTTGGTGAACTAGCCCTAGCATTTGGTGAGTTACTACGAAAACTATGGGCACCTGGGCGAACACCAATTGCTCCTCGGCCTTTTAAAACAAAGCTTGTTCGCTTTGCACCTCAGTTCAGTGGGCACAATCAACATGATTCTCAGGAGCTTTTAGCATTTCTTCTGGATGGTCTTCATGAAGACTTGAATCGTGTAAAGCACAAACCATATATAAAATCTCGAGATGCTGATGGCCGACCTGATGAAGAAGTGGCTGATGAATATTGGGCAAATCATATTGCTCGTAATGATTCCATAATTGTTGATGTATGCCAGGGACAATACAAGTCAACTTTGGTTTGTCCAGTTTGCAATAAAGTCTCTGTCACATTTGATCCTTTTATGTACCTTTCCCTGCCACTCCAGCCCACCACCAGTAGAACCATGACAGTGACAGTTTTTGCTTGCGATGGAGCTGCCCTTCCATCTGCTTGTACAGTAACTGTCCCTAAGCCGGGACGATGCAGAGATCTCATACAGGCACTTAGCAATGCTTGCTCATTGAAACACAATGAGAGGCTAGTGCTTGTGGAGATACGAAACCATTTGATCCATAGATATTTTGAAGATCCTCTTCAATTGTTGTCTACTATCAAAGATGATGACCGTCTTGCTGCATACAAGGTTCCAAAGATAGACAAGAACACAAAGTATCTCCAGTTGATACACCGCCGAAGAGAGCAGAGTAGTGACTCACACATCATATCAGGATGGAAACCATATGGAACACCTATTGTTTCATTGATTTCATGTGATGATACAGTCACAAGAGGTGATATACAAGTAATAGTTAATCGTATGCTCTCTCCTCTGCTAAGGAAAGGTATCAATGTAGAACAAGCTACCACTTCTGAAACAAGCATCCCAAAAGCAACATCTGATCAATGCAGTTTTAATTCTGATGATGATGCATGTGCTGCCAACACGGTGTCAAATTCAGTAAATAAGGATACTACCAATTCAAAGGCACCACCAATGCCAACATTACCTCTTCTCTTGGTAGATGATAGCAATGCTTGCATTGATCTTTCAATGGGAGAGGAGAAAGTAGTTAAACTGTCGCCAATGTCACCAAAGGTTTTGGTGTATATTGATTGGTCTCAGAAGCTTCTGGAGAAGTATGATACTCATCCACTTGAGACTTTGCCTGAAGTTTTAAAATATGGACCTGTAACCAAGAAAGCTCGTACTGAACCTCTCTCCTTGTACACCTGCTTGGAAGCTTTTCTGCGTGAAGAACCTCTGGTGCCCGAAGATATGTGGTTATGTCCTAAATGCAAAGAGAGACGACAAGCAAGCAAGAAGCTTGATTTGTGGAGACTCCCAGAGGTTTTGGTCATTCATTTGAAGAGGTTCTCATACAGCAGGTCAATGAAGCATAAACTGGAGACTTTTGTTAACTTTCCCATTCATGATTTTGATTTAACTAATTACATAGCCAACAAAAACAATTCTCGGCGTCAACTGTACGAACTGTATGCCCTTACAAATCATTATGGCAGTATGGGTAGCGGGCATTACACAGCACATATTAAGCTTTTAGATGAGAACAGGTGGTACAATTTTGATGACAGCCACATATCACTCATAAGTGAAGATGAGGTTAACACTGCTGCTGCTTATGTTCTATTTTACCGGAGGGTGAAGAGTGACGATGCCACTGTTAGCAATGGGGCTTAA 2814 0.4197 MMTEVSMCNTSVSELSPDEERIMIRDIALAAQANSKEGDTFFLITQRWWQHWIEYVNQDQTNTSYDASSLSEHCDLVNSTALKRPAGIDNSDLIDDAVSEDSGMGIEIHDTLLEGRDYVLLPQEVWNQLFRWYGGGPTLARKVISSGLSQTELAVEVYPLRLQLLMLPKNDRFPIRISKKETIGQLHRKACEIFDLPPDQVCIWDYYARRKHALMNDMDKTLDDANLQMDQDILVEVINNTNNTSFAQENGSAQREANSVLVEPSKSSLSIAGGLSASRGASRSYNTDLSSSQNLNSPVRDVENPYGTSGVTTRGSFGGLTGLLNLGNTCYMNSAIQCLVHTPEFARYFREDYHREINWQNPLGMVGELALAFGELLRKLWAPGRTPIAPRPFKTKLVRFAPQFSGHNQHDSQELLAFLLDGLHEDLNRVKHKPYIKSRDADGRPDEEVADEYWANHIARNDSIIVDVCQGQYKSTLVCPVCNKVSVTFDPFMYLSLPLQPTTSRTMTVTVFACDGAALPSACTVTVPKPGRCRDLIQALSNACSLKHNERLVLVEIRNHLIHRYFEDPLQLLSTIKDDDRLAAYKVPKIDKNTKYLQLIHRRREQSSDSHIISGWKPYGTPIVSLISCDDTVTRGDIQVIVNRMLSPLLRKGINVEQATTSETSIPKATSDQCSFNSDDDACAANTVSNSVNKDTTNSKAPPMPTLPLLLVDDSNACIDLSMGEEKVVKLSPMSPKVLVYIDWSQKLLEKYDTHPLETLPEVLKYGPVTKKARTEPLSLYTCLEAFLREEPLVPEDMWLCPKCKERRQASKKLDLWRLPEVLVIHLKRFSYSRSMKHKLETFVNFPIHDFDLTNYIANKNNSRRQLYELYALTNHYGSMGSGHYTAHIKLLDENRWYNFDDSHISLISEDEVNTAAAYVLFYRRVKSDDATVSNGA 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02480 937 ProSiteProfiles DUSP domain profile. 15 144 IPR006615 GO:0004843
Pumo5g02480 937 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 321 926 IPR028889 -
Pumo5g02480 937 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 246 925 - -
Pumo5g02480 937 SUPERFAMILY DUSP-like 16 144 IPR035927 -
Pumo5g02480 937 CDD Peptidase_C19R 771 924 - -
Pumo5g02480 937 Gene3D Cysteine proteinases 740 934 - -
Pumo5g02480 937 SMART dusp 34 147 IPR006615 GO:0004843
Pumo5g02480 937 MobiDBLite consensus disorder prediction 270 307 - -
Pumo5g02480 937 Gene3D Cysteine proteinases 311 544 - -
Pumo5g02480 937 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 322 337 IPR018200 GO:0004843|GO:0006511
Pumo5g02480 937 Gene3D - 158 244 - -
Pumo5g02480 937 Gene3D - 6 157 IPR035927 -
Pumo5g02480 937 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 868 885 IPR018200 GO:0004843|GO:0006511
Pumo5g02480 937 SUPERFAMILY Cysteine proteinases 319 926 IPR038765 -
Pumo5g02480 937 Pfam DUSP domain 38 144 IPR006615 GO:0004843
Pumo5g02480 937 Pfam Ubiquitin carboxyl-terminal hydrolase 321 923 IPR001394 GO:0004843|GO:0016579
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02480 Pumo-Chr5 68783392 68796236 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02480 779 928 Miscellaneous Gene Families AT4G31670 33.987 4.91e-17 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02480 - - gmx:100794067 1815.82