Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02464 ATGGCCAAAGGCGTAATCTCAGACGAAGAAGACGACGTCGAACTCGACGAGGAAGAGAGGGAACACGTCGACGGTGACGAATTGGAAGAGGGTCGCGATGTGGACAACGAGGACGAGGACGAAGAAGAGGAAGGGCAGGATGAATATGAAAATGACGGGTTTATAGTGGATGACATTGAGGACGAAGAGGAGCAGGATGAAGAAGAGAGAGCAGAAAGTGATGAGGAGCGACAGAAGAAGAAAAAGAGGAAGAAAAAGGAGGAGTATGTCCTTGATGAAGATGATTATGAATTGCTGGAGGACAATAATATCAATATTCATCGTCGGAAGGAGAGCAAAAAGTTCAAGCGGCTGAAAAAAGGCAGGAGGGATACTGGGGAGGAGCCCTCTGGGCTGTCTGATGAGGAGGAGTTTGTTGGAAGTGGTAAAGTTGGGCGAACTGCTGAGGAGAAGCTTAAACGCAGTTTATTTGGTGATGATGAAGGAGCTCCACTTGAAGACATTGCTGAAGAGGAGGAGCAAGGAGAAGAGGAAGAGGACGCTGACATAGGAGAAGATGATGAAATGGCTGACTTCATTGTGGATGAAGAAGAAGTTGATGAGAATGGGGCTCCTATGAGGCAGAGGAAGCTGAAGAGAAAGAAAACTAGGCAGGCTCCTGGAGTCTCTTCTTCAGCTCTACAAGAAGCTCAAGAATTATTTGGCGATCCAGATGAGTTGATTCTGAATCGCCAGAAAAATCTAGAAATGAGTGAATTTAGAGAGACTAGACTTGAAGATGAATTTGAGCCTATTGTTCTTTCTGAGAAATATATGACAGAGAAGGATGACCGGATTAGGGAGCTTGATATTCCTGAGAGAATGCAGATATCAGATGAGAGTACTGGTGCTCCTCCATTGGATGGAGGTAGTATAGATGAAGAGAGTCAATGGATATGTAATCAACTTAAAAATGGAGCAATCCCCTGGATTCCCAAGAAGATCTCAACCTCCCAAAATAATGAAGAGGACGACCTACCAGTCGACAAGGATGATATTATCAGATTTTTGGAACTGCATCATGTGCAAAAATTAGATATTCCTTTTATTGCTATGTATCGGAAGGAGGATTGCTTAAGCCTATTGAAAGACCTAGAGCACCCTGAAGCTGGTGATGATAATTGGGATAAGAATGACAAGACACCTACTCTGAAATGGCACAAGGTACTTTGGGCTCTTCAGGACTTGGACAAGAAGTGGTTGCTTCTTCAGAAGCGGAAGAGTGCCCTCCAGTCATACTATAATAAACGGTTTGAAGAAGAGTCCCGCCGCGTGTATGATGAAACAAGACTAAACTTGAATCGTCAATTGTTTGAATCAGTTATGAGATCACTGAAGGAAGCAGGATCTGAGAGGGAGGTTGATGATGTTGACTCCAAGTTCAACTTGCATTTCCCACCAGGCGAAGCTGGTGTTGATGAAGGACAATACAAGAGGCCAAAAAGGAAGTCAATGTATAGCACTTTCAGTAAGGCCGGTCTCTGGGAGGTTGCAAGCAGGTTTGGGTGTAGTCCTGAGCAACTTGGATTATGTCTAACTGAAGTTAACCTGCAAGAGTTGGAAGATCCAAAGGAAACACCAGAAGAGATGGCTTCTAACTTTACATGTGCTATGTATGATACCCCTGAAGAAGTACTTAAATGTGCCAGGCACATGGCAGCTGTTGAGATAAGTTGTGAACCTAGCATTAGGAAACATGTTCGTAGCCACTTTCTTGACCATGCAGTTGTGTCAACTTGTCCTACTGCTGATGGAAATACAACAATAGATTCTTTCCATCAGTTTGCTGGGGTGAAGTGGCTGCGGGAGAAGCCTTTGTCTAAGTTTGAAGATGTGCAATGGCTCCTTATACAGAAGGCAGAAGAGGAGAAACTTATTCAAGTTACTATTAAGCTGCCTGAGGAGTATCTTAATAAGTTAATAGACCAATTCAATGAATATTATATTAGTGACAGTGTTAGCAGATCTGCTCAACTGTGGAATGAACAGAGGAAGTTGATACTACATGATGCCATTTTTCGATTCCTTTTACCATCAATGGAAAAAGAGGCAAGAGGTGTCTTGGCAAGTAAAGCAAAGAATTGGTTACTTATGGAATATGGGAAGGCCTTATGGAGTAAGGTTTCTGTGGGACCTTATCAACAGAAGGAAAATGATCTTGGCTCAGATGATGAGGCTGCTCCTCGGGTTATGGCCTGCTGTTGGGGCCCTGGAAAGCCACAAACAACTTTTGTCATGTTAGATTCATCTGGAGAAGTGCTAGATGTGCTTTACACTGGGTCACTTACTTTTAGGTCACAAAATGTTAATGACCAACAACGGAAGAAGAATGACCAGGAACGGGTGTTGAAGTTTATGACCGATCACCAACCGCATGTCGTTGTTTTAGGAGCAGTTAACTTGTCTTGCACGCGTTTGAAGGAAGATATATACGAGGTCATTTTTAAGATGGTAGAGGAAAACCCTAGAGATGTTGGGCACGAAATGGATGGGCTCAGCATTGTCTATGGAGATGAGTCTCTTCCCCGTCTTTATGAAAATTCTCGAATTTCCTCTGAACAACTTCCTTCACAGCAAGGTATAGTGAGGCGGGCTGTTGCTCTTGGGCGTTATCTTCAGAACCCATTGGCAATGGTTGCAACATTATGTGGACCTAGAAAGGAAATATTGTCATGGAAACTGAGCCCTTTGGAGAGTTTTCTCAACCCAGATGATAAATTTGCAATGGTTGAGCAGGTTATGGTAGATGTGACCAATCAGGTTGGCTTAGACATTAATTTAGCAATAAGTCATGAATGGTTATTTGCTCCATTACAATTTATTTCTGGGCTTGGTCCACGGAAGGCTGCATCCTTACAGAGATCCCTTGTAAGAGCTGGTGCAATTTTTACTCGGAAGGACTTTCTGACAGAACATAAACTTGGTAAAAAGGTGTTTGTCAATGCGGTTGGTTTCTTGCGTGTCCGGCGAAGTGGGTTAGCTGCCAGCAGCAGCCAATTTATCGATTTGCTGGATGATACAAGAATTCATCCTGAATCATATATTCTTGCACAAGAGTTGGCCAAAGATGTGTATGAAGAAGATGGCACTGGTGATGCAAATGACGATGATGATGCTCTAGAGATGGCCATAGAGCACGTGAGAGACCGACCTAGTTATTTGAAAAACCTTGATGTTGAGGAATATGCTTCTGGGAAAAAACGTCAGAACAAAATACAAACTTTCTATGACATAAAAAGAGAATTGATTCAAGGTTTTCAGGATTGGCGTAAGCAATATGAGGAACCAAGTCAGGATGAGGAATTCTATATGATTTCAGGTGAGACTGAAGAGACCCTTGCTGAAGGCAAAATCGTCCAAGTCACAGTTCGCAGAGTGCAAGCCCAGAAAGCAATATGTGGGCTTGAATCTGGAATGACTGGAATCCTCATGAAAGAAGACTATACAGATGACTGGAGAGATATAATTGAATTATCTGATAGGCTACATGAAGGTGACATGCTCACTTGTAAAATTAAGTCAATCCAAAAGAATAGGTATCAAGTCTTCCTTGTATGTAAGGATAGTGAAATGAGAAGTAATCGGTTACAGAATAACCGTGATATTGACCCCTACTACCATGAAGACCGGAGCTGTTTTCAGAGTGATCAAGACAAAGCTCGGAAAGAAAAGGAGCTTGCAAAGAAGCATTTCAAGCCAAGGATGATTGTTCATCCACGCTTTCAGAACATAACTGCAGATGAAGCAATGGAGTTCTTGTCTGACAAAGATCCTGGAGAAAGTATTATCCGTCCTAGTTCACGAGGACCTTCATATCTTACTTTAACTCTTAAAATTAATGATGGAGTATATGCCCATAAGGATATAGTTGAAGGTGGGAAGGAACACAAGGACATTACAAGCTTACTCCGAATTGGGAAGACACTAAAAATTGGAGAGGACACTTTTGAGGACTTAGATGAGGTTATGGACCGTTATGTTGATCCCTTGGTGGCTCACTTGAAGGCAATGTTAAACTATCGCAAATTCCGAAAGGGTACAAAAGCAGAAGTTGATGAACTTTTGAGGATAGAGAAAGCCGAGTATCCTATGCGCATAGTCTATAGTTTTGGCATCTCGCATGAACATCCTGGCACATTTATATTAACTTATATAAGAAGTACAAATCCCCACCATGAGTACATTGGGCTTTACCCAAAAGGGTTCAGGTTTAGGAAAAAGATGTTTGAGGACATTGATAGGCTTGTGGCATATTTTCAGAGGCATATTGATGATCCCCAGCATGATTCGGCCCCCTCCATTAGATCTGTTGCTGCTATGGTACCAATGCGAAGCCCTGCAGCTGGTGGCTCATCAGGGGCATCTGTGGGTAGTGGCTGGGGTGGTGGTTCAAACAGTGAGGGTGGCTGGAGAAGTCACTCTTATGATAGGGATCGATCATCTACTCCTGGTTCCAGGACAGGACGGGGTGAATACAGAAACAATGGGAATCAGGACGAACATCCTAGTGGAGTGCCTCGTCCATATGGTGGTGGACGAGGACGTGGACGTGGTCGTGGTAGAGGTTCTTATAACGATAGAGGACACAACTCCAATAATGATAGGCAGGACTCTGGTTATGGGGGCAGATGGGGTTCTAATAATAATACAAAGGATTTGGATGATGGTTTAAGCAATTTTCCAGGGGCCAAGGTTCAAATTTCTCCTGGAAGGGAAGCTTTTCCTGGTGGTTGGGGAGGAGGTGGAGCTAATAACAGTGACACCGGTGGTGGTGGTGGTTGGGGACAAGCGAGTGGTGGTGCTGGTCCAAGTGACGGTGAACAAGGAAGCTCTGGCTGGGGATCTGCCCCCAAGAAAGCAGCATCTGGGAACGGATGGGGATCTGGAAATTCTGGCGGTTGGTGA 4944 0.4365 MAKGVISDEEDDVELDEEEREHVDGDELEEGRDVDNEDEDEEEEGQDEYENDGFIVDDIEDEEEQDEEERAESDEERQKKKKRKKKEEYVLDEDDYELLEDNNINIHRRKESKKFKRLKKGRRDTGEEPSGLSDEEEFVGSGKVGRTAEEKLKRSLFGDDEGAPLEDIAEEEEQGEEEEDADIGEDDEMADFIVDEEEVDENGAPMRQRKLKRKKTRQAPGVSSSALQEAQELFGDPDELILNRQKNLEMSEFRETRLEDEFEPIVLSEKYMTEKDDRIRELDIPERMQISDESTGAPPLDGGSIDEESQWICNQLKNGAIPWIPKKISTSQNNEEDDLPVDKDDIIRFLELHHVQKLDIPFIAMYRKEDCLSLLKDLEHPEAGDDNWDKNDKTPTLKWHKVLWALQDLDKKWLLLQKRKSALQSYYNKRFEEESRRVYDETRLNLNRQLFESVMRSLKEAGSEREVDDVDSKFNLHFPPGEAGVDEGQYKRPKRKSMYSTFSKAGLWEVASRFGCSPEQLGLCLTEVNLQELEDPKETPEEMASNFTCAMYDTPEEVLKCARHMAAVEISCEPSIRKHVRSHFLDHAVVSTCPTADGNTTIDSFHQFAGVKWLREKPLSKFEDVQWLLIQKAEEEKLIQVTIKLPEEYLNKLIDQFNEYYISDSVSRSAQLWNEQRKLILHDAIFRFLLPSMEKEARGVLASKAKNWLLMEYGKALWSKVSVGPYQQKENDLGSDDEAAPRVMACCWGPGKPQTTFVMLDSSGEVLDVLYTGSLTFRSQNVNDQQRKKNDQERVLKFMTDHQPHVVVLGAVNLSCTRLKEDIYEVIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSEQLPSQQGIVRRAVALGRYLQNPLAMVATLCGPRKEILSWKLSPLESFLNPDDKFAMVEQVMVDVTNQVGLDINLAISHEWLFAPLQFISGLGPRKAASLQRSLVRAGAIFTRKDFLTEHKLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYILAQELAKDVYEEDGTGDANDDDDALEMAIEHVRDRPSYLKNLDVEEYASGKKRQNKIQTFYDIKRELIQGFQDWRKQYEEPSQDEEFYMISGETEETLAEGKIVQVTVRRVQAQKAICGLESGMTGILMKEDYTDDWRDIIELSDRLHEGDMLTCKIKSIQKNRYQVFLVCKDSEMRSNRLQNNRDIDPYYHEDRSCFQSDQDKARKEKELAKKHFKPRMIVHPRFQNITADEAMEFLSDKDPGESIIRPSSRGPSYLTLTLKINDGVYAHKDIVEGGKEHKDITSLLRIGKTLKIGEDTFEDLDEVMDRYVDPLVAHLKAMLNYRKFRKGTKAEVDELLRIEKAEYPMRIVYSFGISHEHPGTFILTYIRSTNPHHEYIGLYPKGFRFRKKMFEDIDRLVAYFQRHIDDPQHDSAPSIRSVAAMVPMRSPAAGGSSGASVGSGWGGGSNSEGGWRSHSYDRDRSSTPGSRTGRGEYRNNGNQDEHPSGVPRPYGGGRGRGRGRGRGSYNDRGHNSNNDRQDSGYGGRWGSNNNTKDLDDGLSNFPGAKVQISPGREAFPGGWGGGGANNSDTGGGGGWGQASGGAGPSDGEQGSSGWGSAPKKAASGNGWGSGNSGGW 1647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02464 1647 CDD SH2_Cterm_SPT6_like 1350 1436 IPR035018 -
Pumo5g02464 1647 Pfam HHH domain 1016 1103 IPR041692 -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 1458 1647 - -
Pumo5g02464 1647 PANTHER TRANSCRIPTION ELONGATION FACTOR SPT6 9 1504 IPR017072 GO:0032968
Pumo5g02464 1647 SUPERFAMILY Ribonuclease H-like 741 896 IPR012337 -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 1 231 - -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 1498 1514 - -
Pumo5g02464 1647 SUPERFAMILY Nucleic acid-binding proteins 1124 1204 IPR012340 -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 72 92 - -
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 489 747 - -
Pumo5g02464 1647 ProSiteProfiles S1 domain profile. 1129 1200 IPR003029 GO:0003676
Pumo5g02464 1647 SUPERFAMILY RuvA domain 2-like 1015 1104 IPR010994 -
Pumo5g02464 1647 Gene3D SH2 domain 1237 1348 IPR036860 -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 1616 1630 - -
Pumo5g02464 1647 Pfam SH2 domain 1218 1435 IPR035420 -
Pumo5g02464 1647 Gene3D SH2 domain 1349 1445 IPR036860 -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 9 71 - -
Pumo5g02464 1647 SUPERFAMILY SH2 domain 1254 1340 IPR036860 -
Pumo5g02464 1647 PIRSF Spt6 2 1506 IPR017072 GO:0032968
Pumo5g02464 1647 Gene3D - 1010 1102 IPR042066 -
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 907 1004 - -
Pumo5g02464 1647 Gene3D - 1122 1210 IPR012340 -
Pumo5g02464 1647 FunFam Transcription elongation factor Spt6 1008 1102 - -
Pumo5g02464 1647 Pfam Helix-hairpin-helix motif 900 1001 IPR032706 -
Pumo5g02464 1647 Gene3D - 731 1121 IPR037027 GO:0006139
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 139 161 - -
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 731 900 - -
Pumo5g02464 1647 Coils Coil 56 88 - -
Pumo5g02464 1647 Gene3D - 262 1004 - -
Pumo5g02464 1647 SUPERFAMILY Tex N-terminal region-like 338 719 - -
Pumo5g02464 1647 SMART rnase_8s 741 859 IPR006641 GO:0006139
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 295 486 - -
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 1349 1442 - -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 1547 1568 - -
Pumo5g02464 1647 Pfam Acidic N-terminal SPT6 35 124 IPR028083 -
Pumo5g02464 1647 SUPERFAMILY RuvA domain 2-like 912 1002 IPR010994 -
Pumo5g02464 1647 CDD SH2_Nterm_SPT6_like 1251 1339 IPR035019 -
Pumo5g02464 1647 Gene3D - 295 497 IPR023319 -
Pumo5g02464 1647 SMART S1_6 1127 1200 IPR022967 -
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 1122 1210 - -
Pumo5g02464 1647 Pfam Holliday-junction resolvase-like of SPT6 740 896 IPR028231 -
Pumo5g02464 1647 FunFam Transcription elongation factor spt6 1237 1348 - -
Pumo5g02464 1647 Gene3D - 498 934 IPR023323 -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 163 199 - -
Pumo5g02464 1647 MobiDBLite consensus disorder prediction 1532 1546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02464 Pumo-Chr5 67773858 67783579 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02464 K11292 - gmx:100809136 2949.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02464 5 67773858 67783579 Pumo5g02464 5 67773858 67783579 ECH