Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02398 ATGGCCACTGTTCTCAGAACCCCCACTTTCCGGCCACCGCCTCCGCCGCGCGCCGCCAAGTCGCCGAAACCCTCGCGCGTCGCCGTTGCGTCGTTCAGACAGAGCACCACGTACAGGAGAAAACCCTCGCTCCTCTCCTCCCTGCGGTTCCCTACCGTTCCCTCTCTACGGTTCGTCAGGTTCGTTCCCTTCGCTTTCGACGGCGACACCGAGGCCCCGCAAGTTCAGGAACCCGAAGTTCAGGTTCTGGACCCTTCAGATGGCGCTGTTGGTGTAAATGACAGTGCAAATGAAAATGAGGTTAGCGATGCTGATGCTGATGAAACATTTGCTTCACCTTTCTTACTGTTACTTCAATCTTACAAAGAAGCATTAGCTAATAATGACGAAGTCAAAATTGCTGAGTTGGAATCGTCATTAAAATCCATTGAAGATGAGAAGATAGAACTTGAAGGGAAAATTGCTTCTTTATCAGAAGAGTTATCAACAGAAAAGGATCGGATTCTAAGGATTAGTGCAGACTTCGACAATTTTCGGAAGAGGACAGAGAGAGATCGCCTTTCACTGGTCACAAATGCTCAGGGTGAAGTTGTGGAGAGTTTGTTGTCTGTATTGGATAATTTTGAGAGAGCAAAAACTCAGATTAAGGTGGAGACAGACGGAGAGGAGAAGATAAACAACAGCTATCAGAGCATATATAAACAATTCATTGAAATTCTAACTTCACTTGGAGTTGAGCCAGTGGAGACAGTTGGAACACCCTTTGATCCATTGCTACACGAAGCAATTATGCGTGAAGATTCTGATGAATTTGAGGATGGCATCATAATTCAAGAATTTAGAAAGGGTTTTAAACTTGGTGACCGTCTCTTGCGTCCGTCAATGGTGAAGGTATCAGCTGGTCCTGGACCTGCAAAGCCTGAACAAGAAGCACCGCAAGAAGAACAGGTCGACACTGAAATTTCTGAGGACAGTAAAGAAAATGTGGGCAGCACAGAAACAGAGTCTGCTTGA 1014 0.4635 MATVLRTPTFRPPPPPRAAKSPKPSRVAVASFRQSTTYRRKPSLLSSLRFPTVPSLRFVRFVPFAFDGDTEAPQVQEPEVQVLDPSDGAVGVNDSANENEVSDADADETFASPFLLLLQSYKEALANNDEVKIAELESSLKSIEDEKIELEGKIASLSEELSTEKDRILRISADFDNFRKRTERDRLSLVTNAQGEVVESLLSVLDNFERAKTQIKVETDGEEKINNSYQSIYKQFIEILTSLGVEPVETVGTPFDPLLHEAIMREDSDEFEDGIIIQEFRKGFKLGDRLLRPSMVKVSAGPGPAKPEQEAPQEEQVDTEISEDSKENVGSTETESA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02398 337 CDD GrpE 165 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 Gene3D Head domain of nucleotide exchange factor GrpE 244 299 IPR009012 GO:0006457
Pumo5g02398 337 MobiDBLite consensus disorder prediction 1 32 - -
Pumo5g02398 337 FunFam Protein GrpE 244 299 - -
Pumo5g02398 337 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 149 244 IPR013805 -
Pumo5g02398 337 Hamap Protein GrpE [grpE]. 93 300 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 MobiDBLite consensus disorder prediction 295 337 - -
Pumo5g02398 337 Gene3D - 127 242 IPR013805 -
Pumo5g02398 337 Coils Coil 126 167 - -
Pumo5g02398 337 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 245 301 IPR009012 GO:0006457
Pumo5g02398 337 ProSitePatterns grpE protein signature. 255 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 PANTHER GRPE PROTEIN 21 300 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 Pfam GrpE 140 299 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 PRINTS GrpE protein signature 252 267 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 PRINTS GrpE protein signature 279 298 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 PRINTS GrpE protein signature 169 185 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 PRINTS GrpE protein signature 197 212 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Pumo5g02398 337 FunFam GrpE protein homolog 126 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02398 Pumo-Chr5 66643450 66648461 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02398 K03687 - gmx:100820521 559.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02398 5 66643450 66648461 Pumo5g02398 5 66643450 66648461 ECH