Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02395 ATGGAATCGAGCGTTCTGGAAAGTCTGGGCGTGGAGATAATCGGCGTGATGAGTCCGGTTTCGATCTGCATGTTTTTGGTTGTCTTGTTGGTTTACACGCTCTCCTCGCCTTCCTCAGCCACCATCGCCACCACCGCCGCCAACCTCGTCTACGACGAGAACCCCTCCGACACGGCGGCGCAGAAATTCGAGGGCGCGGTGCTCAACGCCGTCGTTTTCGTGGTCCTCATCGCGCTGGTGACGTTCCTCCTGGTCCTCCTCTACTACTACAACTGCACCGCCTTCCTCCGCCACTACACGCGCTTCTCCGCCTTCTTCGTCCTCGCCTCCATGGGCGGATCCATCCTCCTCTCCCTCCTCCAGCGCTTCTCCGTCCCCCTCGACGTCGTAACGGCCTTCCTCCTCCTCTTCAACTTCACCGTCGTCGGCGTCCTCTCCGTCTTCTCCGGCGGCATCCCGATCCTCCTCCGCCAGTGCTACATGGTCTGTTTGGGAATCATCGTCGCCGCCTGGTTCACCAAATTGCCGGAGTGGACCACGTGGACGCTCCTCGTCGCGCTCGCGCTCTACGATTTGGTCGCCGTCCTCGCTCCCGGCGGCCCGCTCAAGCTGCTCGTGGAATTGGCCTCCAGCCGGAACGAGGAGCTGCCGGCGCTGGTCTACGAGGCGCGCCCGACGGTCACCACGCGAAACCACGCCGCGGCTCTAGGGTTTCTTGTCGCCGGGGCTTCGGATTCGGAAGCTTCCAGAATTGAGCTTCAGGTGGTGTCCAGGGATAATTTGAGTAGTAACAATAACAATGATAACGACAATGAGGGCGAGGAGAATCGGATTAATGATGAAGGGGAAAGATCGCCATTAGTTGGTGGAATGAGATTTGGTGAGGATGTTGGGGTTGGGGAAAATGAGGAAGGGGAAGGGTTGAGGAGTGAGATTGGTGATAGGGGGATTAAGCTTGGACTTGGGGACTTTGTTTTCTACAGTGTTCTTGTGGGGAGAGCGGCTATGTATGATTTGATGACAGTGTATGCGTGTTACCTTGCCATTATTTCGGGGCTGGGGTGCACTCTCATTTTGTTGTCCGTGTGCCGGCAGGCTCTGCCGGCGCTTCCGATTTCGATCGCCTTGGGGATTCTGTTCTATTTTTTGACAAGGCTGCTCATGGAGCCCTTCATTGTTGGGACCGCCACAAATTTGATGATGTTTTGA 1209 0.5691 MESSVLESLGVEIIGVMSPVSICMFLVVLLVYTLSSPSSATIATTAANLVYDENPSDTAAQKFEGAVLNAVVFVVLIALVTFLLVLLYYYNCTAFLRHYTRFSAFFVLASMGGSILLSLLQRFSVPLDVVTAFLLLFNFTVVGVLSVFSGGIPILLRQCYMVCLGIIVAAWFTKLPEWTTWTLLVALALYDLVAVLAPGGPLKLLVELASSRNEELPALVYEARPTVTTRNHAAALGFLVAGASDSEASRIELQVVSRDNLSSNNNNDNDNEGEENRINDEGERSPLVGGMRFGEDVGVGENEEGEGLRSEIGDRGIKLGLGDFVFYSVLVGRAAMYDLMTVYACYLAIISGLGCTLILLSVCRQALPALPISIALGILFYFLTRLLMEPFIVGTATNLMMF 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02395 402 Pfam Presenilin 10 275 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo5g02395 402 Gene3D Presenilin 298 393 IPR042524 -
Pumo5g02395 402 FunFam Presenilin 295 393 - -
Pumo5g02395 402 MobiDBLite consensus disorder prediction 260 285 - -
Pumo5g02395 402 SMART psh_8 64 388 IPR006639 GO:0004190|GO:0016020
Pumo5g02395 402 PRINTS Presenilin family signature 174 181 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo5g02395 402 PRINTS Presenilin family signature 17 27 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo5g02395 402 PRINTS Presenilin family signature 191 208 IPR001108 GO:0004190|GO:0016020|GO:0016485
Pumo5g02395 402 PANTHER PRESENILIN 2 402 IPR001108 GO:0004190|GO:0016020|GO:0016485
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02395 Pumo-Chr5 66583143 66584941 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02395 1 402 Miscellaneous Gene Families AT1G08700 62.115 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02395 K04505 - gmx:100819461 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02395 5 66583143 66584941 Pumo5g02395 5 66583143 66584941 ECH