Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02392 ATGGCGCTATCTTCTTCTTCATCATTGTGTTGGTGTTTTTCCCCTACACCGCTGCTTCCCTTCAATCTCACTCGGCTCCAACGGCACCGTTTTGTTAGCCTCAAACCCTATACTCGTTCCCAATCTCAGCACACCGCCGCTAAAGCTTCTGCTCCGTTAGTGTACTCCACCAGACAAGGGTTTGACACAGTCAACATTGCCGAAGATGTCACCCAGTTGATTGGGAATACACCAATGGTGTACCTCAATAAAGTTACAGAAGGTTGTGTGGCTAACATTGCTGCGAAACTTGAGTCTATGGAACCTTGCCGAAGTGTCAAGGACAGAATTGGCTATAGTATGTTATCTGATGCTGAAGAGATTGGAGCAATTTCTCCTGGGAAGACCATTTTGGTTGAACCAACAACTGGAAATACGGGACTTGGCATTGCTTTTGTTGCAGCAACAAAGGGGTACAAACTTATAGTCACAATGCCTGCTTCCATTAATGTTGAGAGGAGAATCCTTTTACGTGCATTTGGTGCAGAGGTTATTTTGACTGATGCTGAGAAGGGGCTAAAAGGGGCAGTTGACAAAGCTGAAGAAATTGTTCGCAGCACACCCAATGCTTACATGTTTCGGCAGTTTGATAACATGACTAATACAAAGATCCACTTCGAAACTACAGGGCCAGAGATATGGGAGGATACCATGGGTAATGTTGATGTATTGGTAGCTGGGATTGGAACTGGTGGCACTGTTACTGGCACCGGTCGTTATCTGAAAATGATGAACAAAAATATAAAGGTGGTTGGGGTGGAACCTGCAGACAGAAGTGTTGTTTCGGGTGACAATCCTGGTTTCATGCCAAGCATTTTGGATATCAAACTGCTTGATGAAGTTATCAAGGTTACAAATGTTGAAGCTGTTGAAATGGCAAGGAGATTAGCATTGAAAGAAGGTTTGCTGGTTGGGATTTCTTCAGGAGCTGCAGCAGCTGCTGCCATAAATTTAGCAAGACGGCCTGAGAATTCTGGGAAACTTATTGTGGTTATTTTTCCGAGTTTTGGTGAGAGATATATTTCTACTGCTCTCTTCCATTCTATCTATGAAGAGGTTCAGAAAATGTAA 1110 0.4369 MALSSSSSLCWCFSPTPLLPFNLTRLQRHRFVSLKPYTRSQSQHTAAKASAPLVYSTRQGFDTVNIAEDVTQLIGNTPMVYLNKVTEGCVANIAAKLESMEPCRSVKDRIGYSMLSDAEEIGAISPGKTILVEPTTGNTGLGIAFVAATKGYKLIVTMPASINVERRILLRAFGAEVILTDAEKGLKGAVDKAEEIVRSTPNAYMFRQFDNMTNTKIHFETTGPEIWEDTMGNVDVLVAGIGTGGTVTGTGRYLKMMNKNIKVVGVEPADRSVVSGDNPGFMPSILDIKLLDEVIKVTNVEAVEMARRLALKEGLLVGISSGAAAAAAINLARRPENSGKLIVVIFPSFGERYISTALFHSIYEEVQKM 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02392 369 CDD CBS_like 75 355 - -
Pumo5g02392 369 Pfam Pyridoxal-phosphate dependent enzyme 70 347 IPR001926 -
Pumo5g02392 369 PANTHER CYSTATHIONINE BETA-SYNTHASE 66 365 - -
Pumo5g02392 369 Gene3D - 72 355 IPR036052 -
Pumo5g02392 369 FunFam Cysteine synthase 101 180 - -
Pumo5g02392 369 Gene3D - 108 210 IPR036052 -
Pumo5g02392 369 NCBIfam cysteine synthase A 71 359 IPR005859 GO:0004124|GO:0006535
Pumo5g02392 369 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 66 363 IPR036052 -
Pumo5g02392 369 NCBIfam cysteine synthase 71 359 IPR005856 GO:0004124|GO:0006535
Pumo5g02392 369 FunFam Cysteine synthase 191 355 - -
Pumo5g02392 369 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 96 114 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02392 Pumo-Chr5 66533936 66539076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02392 62 369 Miscellaneous Gene Families AT3G03630 80.195 4.70e-171 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02392 K22846 - gmx:100816974 650.203
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02392 5 66533936 66539076 Pumo5g02392 5 66533936 66539076 ECH