Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02388 ATGGGTGGCGTGGCCCCAAGGTTCCTCTTCCTGCTGGCCACTCCCTTCTCTCTTCTCCGCCGCCACCACCACCACCACCGCAACCTCTTCCTGTTCTCTTCTTCTCATTCCCTGCGCCTCTCTTCTTCTCCCTCTCCTCTTCCACTCAAACTCAAAGCTTCCTCATTCTCCTCCTCCGCCCCTCTCACCTCTCCCTCGCCCGAGTGGTCCTCATTCCTCTCTCACATCTCCTCCGCCGGCTACCTCCCCTCCCTCCCCGACCACACCTTCACTGCCGCCGCCGCCCAACAGCTCGACCACTCCTTCCTCCGCGACGCCACCGCCTGCCTCGCCTTTGCGCGCGACCGACCTAACCTTCTCAGGTTGCTTTCTACGAGAGACATTGCGGCGGTGGTTGAGCATGTCTCCCCCTTTCTCTTCCGTGACGCCGACGATTCCGTCAGGAAGATGAAGTCCTTTCTCTCCAACGGTGACGCCAATGTCTTGGACACTGATAGAGCAAATACAGCTGATCTAATGAAGTTTTTGCTGAGTTATGCAAGTAACCCATTTGTCTCTTCAGAAGGGAACAGTCTCAATAAAAGAGATCTTGTTGAATCATCTGTCAGAAATCTATTTGGTGAACTTTTCAAGCTGAGTTATAGTGCACCTGGACCTAATGCTTTTGATTCACTGCAAAGTCAAATGGCTGGCAGATTTGGACAGACAAAGCCTCCTGGACAAAAAATTGAAATGAAGAGGGGAGATTGGATTTGCCCAAGGTGTAATTTCATGAATTTTGCAAGAAATATTAAATGTCTTGAGTGTGAGGAAGCAAGGCCAAAAAGACAACTGGCTGGAGGTGAATGGGAATGTCCTCAGTGTGATTTCTATAACTATGGGAGGAATATGACTTGCTTAAGGTGTGATTGCAAGCGACCTGGACAAATATCTTTGGGTGCCACCAATACCATATCTAATATGGGGTATGAAAATGGAAACAATCCTAATACTTCAGATGCTGATGCTAGGTTAGCTGCTAATGAAGAAAAAGCACAACGTTGGTTTAGCAAGGTTTCTCAACTAGACAGCGGTGCTGATATTAACAGTGTGATAGCAGATGAAGATTTTCCTGAAATAATGCCATTGAGGAAAGGAGTGAATAGATTTGTTGTGAGCACAAGAAAGACTCCACTGGAGAGGAGGTTGGCTAATGCTCAATACAAGAGAAACTTGTTCAATAATGGCATTCCCGGGACTGAGGATTCTAAAGCTGGGGAGCCAATCAAGTCCCATGACAATCTGGATGACATGCTAGGTCGTTCAGCTGGCCTTCCTCAATTTGACAATAAGAACTTTGTTGATGAACAAAATGCCAGTGGAGACAGCCAACCTTCAACTGCTAGCAATACTTCACATTTTAAAAATGTTAAAGGGGGCTACACTAGTACTGTCCCACCCATTCCATTGTCTGCAGATGCACTTGCCCAAAACTCTGAGAACTTGCTAGTAGAGGAGAGCAGAAAGGTGGTGTTAGACACTGATGTCGGATATGCTAGTTCGGGAGACAGTTCACAACTTTCTAGTAATTCTACAAGCCAAAATATCACAGAGGATAAGGAGAAAGACCAAGCTGAAAAATCTGAGAGGTGGTTTAGAAAGGTTGCTGAGCTGAATGATTTTCCAGATATACCAAGTGCAATATCTGATGAGGATTTCCCTGAAATAATGCCCATGCGTAAAGGAGAAAATCGATTTGTTGTTAGCAAGAAAAAGGATCGTTCTTTGACAACACCAGCATATAAGAGACGTGCGGCCATGGAGCAATCTGGCAAAACCAACTTTGTCCCTTTTGTCCCCTTCCCCCCAGATTACTTTGCCAAAAAGGACAAGCAGCAGGCAGATGGAACAGATTCAATGGTGGCAGACGGAGCTACTTCAACGGATAGGTCCTACGATGATACATCTTCCATATCTGAGGTGGCAGATAAGCCTCCAGAGATGTCAGATGATGCTAGAGCTCAACCTGAACAGAGTCCAAAATCTTCTGAACAGAGGTCAAATAACAATGATGTTGGTTCTATGTACGGGGCATCAACCAGTGGAAATTCAAGGCAGGGTTTCAATCATGATCGTGCTCCAGATTTGACTGGGAGTTCATCCCCAGGTCCAGCATCTGAGAACCAGAGTGGTAGAGCAGAATGGACAGGAAAGAGTTTGGAAGGGTCAGCCGTGAAGGAACCAGATCCTTTGGACATGTCAGAGGAGGCAAAGGCAGAGAGGTGGTTCCGGCGTGTCGCACAGATTAAGGATATTTCTGAGCTCAGTCAGATTCCAGATGAAGATTTTCCTTCAATAATGCCTATGCGCAAAGGGGTGAACAGATTTGTTGTAAGCAAGAGGAAAACACCATTGGAGAGGAGATTGACGTCTCAGCAGTACAGAAGAAATCTTCCAACTGTGAGCTCAGATCCAATTAAAAAAGAAAATGAAGGTAGCTGA 2481 0.4635 MGGVAPRFLFLLATPFSLLRRHHHHHRNLFLFSSSHSLRLSSSPSPLPLKLKASSFSSSAPLTSPSPEWSSFLSHISSAGYLPSLPDHTFTAAAAQQLDHSFLRDATACLAFARDRPNLLRLLSTRDIAAVVEHVSPFLFRDADDSVRKMKSFLSNGDANVLDTDRANTADLMKFLLSYASNPFVSSEGNSLNKRDLVESSVRNLFGELFKLSYSAPGPNAFDSLQSQMAGRFGQTKPPGQKIEMKRGDWICPRCNFMNFARNIKCLECEEARPKRQLAGGEWECPQCDFYNYGRNMTCLRCDCKRPGQISLGATNTISNMGYENGNNPNTSDADARLAANEEKAQRWFSKVSQLDSGADINSVIADEDFPEIMPLRKGVNRFVVSTRKTPLERRLANAQYKRNLFNNGIPGTEDSKAGEPIKSHDNLDDMLGRSAGLPQFDNKNFVDEQNASGDSQPSTASNTSHFKNVKGGYTSTVPPIPLSADALAQNSENLLVEESRKVVLDTDVGYASSGDSSQLSSNSTSQNITEDKEKDQAEKSERWFRKVAELNDFPDIPSAISDEDFPEIMPMRKGENRFVVSKKKDRSLTTPAYKRRAAMEQSGKTNFVPFVPFPPDYFAKKDKQQADGTDSMVADGATSTDRSYDDTSSISEVADKPPEMSDDARAQPEQSPKSSEQRSNNNDVGSMYGASTSGNSRQGFNHDRAPDLTGSSSPGPASENQSGRAEWTGKSLEGSAVKEPDPLDMSEEAKAERWFRRVAQIKDISELSQIPDEDFPSIMPMRKGVNRFVVSKRKTPLERRLTSQQYRRNLPTVSSDPIKKENEGS 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02388 826 MobiDBLite consensus disorder prediction 632 648 - -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 597 749 - -
Pumo5g02388 826 Pfam Zn-finger in Ran binding protein and others 247 274 IPR001876 -
Pumo5g02388 826 Pfam Zn-finger in Ran binding protein and others 281 307 IPR001876 -
Pumo5g02388 826 ProSiteProfiles Zinc finger RanBP2 type profile. 246 275 IPR001876 -
Pumo5g02388 826 SUPERFAMILY Ran binding protein zinc finger-like 240 275 IPR036443 -
Pumo5g02388 826 ProSiteProfiles Zinc finger RanBP2 type profile. 279 308 IPR001876 -
Pumo5g02388 826 ProSitePatterns Zinc finger RanBP2-type signature. 283 302 IPR001876 -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 803 820 - -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 432 473 - -
Pumo5g02388 826 ProSitePatterns Zinc finger RanBP2-type signature. 250 269 IPR001876 -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 763 784 - -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 511 528 - -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 444 472 - -
Pumo5g02388 826 Gene3D - 239 276 - -
Pumo5g02388 826 Gene3D - 277 309 - -
Pumo5g02388 826 SMART zf_4 281 305 IPR001876 -
Pumo5g02388 826 SMART zf_4 248 272 IPR001876 -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 668 729 - -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 511 540 - -
Pumo5g02388 826 MobiDBLite consensus disorder prediction 797 826 - -
Pumo5g02388 826 PANTHER ZINC FINGER PROTEIN 27 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02388 Pumo-Chr5 66496187 66500507 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02388 62 312 EF-hand Containing Proteins AT1G55040 32.082 1.37e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02388 - - gmx:100775801 1367.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02388 5 66496187 66500507 Pumo5g02388 5 66496187 66500507 ECH