Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02387 ATGGCCTCAAAGCTGCTTTTGCAGAGAAGGCTCTTCAGTTCTCTACTGGAGGAGGGTGAATTCCACAGACTGGCTGATTCCACAATACATAGCGTACAAGAGAAATTAGAGGACTATGGAGACTTAGTTGAAGTTGATGGATTTGACATAGACTATGGGAATGATGTTTTGACTGTAAAGCTTGGCGATCTTGGCACCTATGTATTGAACAAACAAACACCAAATCGACAACTTTGGTTGTCTTCTCCAGTGAGTGGTCCGTCAAGGTTTGATTGGGATGGGGATACTAAAGCTTGGGTTTATAGGCGGAACAAAGCAAACTTGTATAAAATTTTGGAAGGAAACATGATACTTGTTAAGGGTGATTTTAATTACAAGGAGGCTCTCACCAAGTCCCTTATCTTCCTAGAGGCACAACGTTCGGGGAAGCTCCCTCCAAATAATAGGGTGCCTTGGAGAGGCGACTCAGCACTCGATGATGGCAAACTCGCTAATGTGGAGCTTGCTGGGGGATACTACGATGCAGGGGACAATGTAAAATATGGGCTACCCATGGCTTTCACCGTTACTACGCTAGCATGGGGTGCCATTTTTTACAAGTCTGAATTTGAAGCTGCAAAAGAGTTGGAAAATCTTCATGATGCCATTCGTTGGGGTACCGATTATTTTCTCAAAGCTAGTTCTCAACACAAAAGATTATATGTGGAGGTAGGGGACCCGGAAGAAGATCACCATTGTTGGGTTCCACCAGAAAATATGAAGACAAAGAGAACAGTTAAGATGATTGGTAGTGACACGCCCGGGACTGAGATTGCAGCTGAAACTGCAGCCGCAATGGCTGCTTCTTCCATTGTTTTTAGGCCAAAAGATCATCAATATGCTCGTCGTCTTCTCAACAAAGCTAAATTGCTTTTCCAAATGGCTAAATCGTACAAAGGAACCTATGATGGAGAGTGTCCTTTTTACTGCTCTTATTCCGGTTATAATCAGGACGAAATGATGTGGGCAGCAACATGGCTATACATGGCTACCAAGAAGTCTATATATATGAAGTACATACTAGAAGAATCCATGAGTGCTAGTGTAGCAGAATTTAGTTGGGACCTTAAGTATGCTGGAGCTCAAATCCTTCTCAGTCAGCTACATTTTGAAGGTGAAAAGAATTTGGAAACATTCAAAAACCATGCTGAAAGTTTCATATGCTCTGTCCTTCCTGATAGTCCCTACCACCAGATTAAATTGTCTCCTGGTGGCTTTATTCATTTGAGAGATGGAGCCAACACACAATATGCCACGAGCACGTCGTTCTTGTTCACTGTATATAGTGATTTGCTTGCCAAACATAATGAGAAAGTCACTTGTGGAGACAAACAATTTAGCTCGTCCCATCTCCTTGCTTTTGCTAAGCAACAAATGGATTACATACTAGGGAAAAACCCTGAAGGAAGATCCTACATGGTAGGATTTGGAAAGAACCCACCAACGCAGGCTCACCATAGAGGTGCTTCCGTGCCCAAATTGAAAAAGGGTGAAGAGGTGGTTTGTGCCTTGAGCTTCTCACAATGGTTTCTCAAAGATGGACCTAACCCAAATGAACTCACTGGTGCCATTGTCGGTGGACCTGACCTCAACGACAAATTCAACGATAAACGTTGGGACTCACCTAAGACTGAACCATGCACCTATGTCAATTCCCTAGCTGTTGGAGCTCTAGCCAAATTTGCATCTTTGGGTTGA 1737 0.4324 MASKLLLQRRLFSSLLEEGEFHRLADSTIHSVQEKLEDYGDLVEVDGFDIDYGNDVLTVKLGDLGTYVLNKQTPNRQLWLSSPVSGPSRFDWDGDTKAWVYRRNKANLYKILEGNMILVKGDFNYKEALTKSLIFLEAQRSGKLPPNNRVPWRGDSALDDGKLANVELAGGYYDAGDNVKYGLPMAFTVTTLAWGAIFYKSEFEAAKELENLHDAIRWGTDYFLKASSQHKRLYVEVGDPEEDHHCWVPPENMKTKRTVKMIGSDTPGTEIAAETAAAMAASSIVFRPKDHQYARRLLNKAKLLFQMAKSYKGTYDGECPFYCSYSGYNQDEMMWAATWLYMATKKSIYMKYILEESMSASVAEFSWDLKYAGAQILLSQLHFEGEKNLETFKNHAESFICSVLPDSPYHQIKLSPGGFIHLRDGANTQYATSTSFLFTVYSDLLAKHNEKVTCGDKQFSSSHLLAFAKQQMDYILGKNPEGRSYMVGFGKNPPTQAHHRGASVPKLKKGEEVVCALSFSQWFLKDGPNPNELTGAIVGGPDLNDKFNDKRWDSPKTEPCTYVNSLAVGALAKFASLG 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02387 578 FunFam Endoglucanase 121 577 - -
Pumo5g02387 578 CDD Frataxin 16 113 - -
Pumo5g02387 578 PRINTS Frataxin signature 16 34 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 PRINTS Frataxin signature 69 84 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 PRINTS Frataxin signature 54 69 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 Pfam Glycosyl hydrolase family 9 125 571 IPR001701 GO:0004553|GO:0005975
Pumo5g02387 578 PANTHER ENDO-1,4-BETA-GLUCANASE 110 575 - -
Pumo5g02387 578 NCBIfam iron donor protein CyaY 18 114 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 ProSiteProfiles Frataxin family profile. 16 125 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 Pfam Frataxin-like domain 17 115 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 NCBIfam frataxin 20 115 IPR017789 GO:0004322|GO:0005739|GO:0006879|GO:0018283
Pumo5g02387 578 SUPERFAMILY Frataxin/Nqo15-like 9 115 IPR036524 GO:0008199|GO:0016226
Pumo5g02387 578 Gene3D Frataxin/CyaY 12 123 IPR036524 GO:0008199|GO:0016226
Pumo5g02387 578 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 474 500 IPR018221 -
Pumo5g02387 578 ProSitePatterns Frataxin family signature. 68 82 IPR020895 -
Pumo5g02387 578 Gene3D - 124 578 IPR012341 GO:0005975
Pumo5g02387 578 SUPERFAMILY Six-hairpin glycosidases 122 575 IPR008928 GO:0005975
Pumo5g02387 578 SMART Frataxin_Cyay_2 16 124 IPR002908 GO:0008199|GO:0016226
Pumo5g02387 578 FunFam Frataxin, mitochondrial 11 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02387 Pumo-Chr5 66486618 66494198 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02387 108 576 Glycoside Hydrolase AT3G43860 69.574 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02387 K01179 - gmx:100811509 864.759