Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02361 ATGCACACCCCGGCGGCGGCGGCGGCGGCGAGCAGGGGCGGCGGCGGCGGAGTCCTGGCGTCGCGGACGAGTTCGCGGTCGGTGACGGAGACGGTGAACGGGTCGCACAAGTTCGTGATCAAGGGTTACTCTCTGGCGAAGGGAATCGGCGTAGGAAAGCACATCGCGAGCGAGACGTTCACGGTGGGAGGGTTCCAGTGGGCGATATACTTCTATCCCGACGGCAAGAACCCTGAAGATAACTCCGCCTACGTTTCCGTCTTCATCGCGCTCGCTTCCGAGGGCACCGACGTTCGCGCGCTGTTCGAACTCACCTTGCTTGACCAGAGCGGGAATGGGAAGCACAAGGTGCATAGCCACTTCGATCGCTCGCTCGAGAGTGGGCCCTACACTCTCAAATACCGAGGCAGCATGTGGGGGTATAAGAGATTTTTCAAACGGGCTCAACTTGAGGCGTCAACTTTCCTCAAGGACGACTGCTTGAAGATAAACTGCACGGTTGGTGTCGTGGTGTCGTCCATTGATTGTTCTAAGTTAAACACAATTCAGGTTCCCGACTCTGATATTGGGGCACATTTCGGGATGCTGTTAGAGAATGAGGAGGGATCAGATGTTACTTTCTCCGTCAGTGGAGAAAGGTTTCATGCGCACAAGCTTGTTTTGGCTGCTCGGTCAACTGCATTTGAAACCGAGTTTTTCAATGGGATGGAGGAGGATGATCATGACATAGTTGTTACTGACATGGAACCAAAGGTTTTCAAGGCTTTGCTTCATTTTATTTATAGAGACACACTTATAGAAGATGAAGAGCTCTTTATGTCACGTTCATCATTCTTGCCTTCAGTATCTGAATCATTTGCAGCAAAGTTGTTAGCTGCTGCAGAAAAGTATGGTTTGCCAAGACTTAAGCTGATGTGTGAATCTGTACTTTGCAAAGACATCTCGATAGATTCTGTTGCCTATATTCTGGCTCTTGCTGATCGTTATCGTGCTACAGAATTGAAGTCTGTCTGTCTACAATTTTCTGCTGAAAACCTTGTTTCTGTGATGCAATCTGATGGTTTTGAGTATCTTAAGGAAAATTGTCCATTGCTGCAATCAGAACTGCTAAAGACCGTGGCAGGATGCGAGGAGGAATTTAGTGGAGAAGGAAAATGTCGAAGCGTGTGGGCCCAATTTTCTGATGGTGGTGACACCAATGATAGGAGTGTAAGACAACAAACCTGGGAAAATGGCGTCGAAAGAAGTCAAAGCTTATGGGTTCACCTTTCTGATGGTGTTAACAACAATGATAGGAGTCCAGGGCCAGAAGCCTGA 1317 0.4905 MHTPAAAAAASRGGGGGVLASRTSSRSVTETVNGSHKFVIKGYSLAKGIGVGKHIASETFTVGGFQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLLDQSGNGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFKRAQLEASTFLKDDCLKINCTVGVVVSSIDCSKLNTIQVPDSDIGAHFGMLLENEEGSDVTFSVSGERFHAHKLVLAARSTAFETEFFNGMEEDDHDIVVTDMEPKVFKALLHFIYRDTLIEDEELFMSRSSFLPSVSESFAAKLLAAAEKYGLPRLKLMCESVLCKDISIDSVAYILALADRYRATELKSVCLQFSAENLVSVMQSDGFEYLKENCPLLQSELLKTVAGCEEEFSGEGKCRSVWAQFSDGGDTNDRSVRQQTWENGVERSQSLWVHLSDGVNNNDRSPGPEA 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02361 438 Gene3D - 313 387 - -
Pumo5g02361 438 CDD BACK_AtBPM-like 311 372 IPR034090 -
Pumo5g02361 438 Pfam BTB/POZ domain 195 312 IPR000210 GO:0005515
Pumo5g02361 438 SMART BTB_4 203 314 IPR000210 GO:0005515
Pumo5g02361 438 SUPERFAMILY TRAF domain-like 30 172 - -
Pumo5g02361 438 FunFam BTB-POZ and math domain 1 179 308 - -
Pumo5g02361 438 SMART math_3 38 150 IPR002083 GO:0005515
Pumo5g02361 438 CDD MATH 34 167 IPR002083 GO:0005515
Pumo5g02361 438 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 32 171 IPR008974 GO:0005515
Pumo5g02361 438 MobiDBLite consensus disorder prediction 1 26 - -
Pumo5g02361 438 FunFam BTB/POZ and MATH domain-containing protein 4 32 171 - -
Pumo5g02361 438 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 23 370 IPR045005 GO:0016567
Pumo5g02361 438 CDD BTB_POZ_BPM_plant 189 311 - -
Pumo5g02361 438 SUPERFAMILY POZ domain 181 314 IPR011333 -
Pumo5g02361 438 Gene3D Potassium Channel Kv1.1; Chain A 179 308 IPR011333 -
Pumo5g02361 438 ProSiteProfiles MATH/TRAF domain profile. 33 167 IPR002083 GO:0005515
Pumo5g02361 438 ProSiteProfiles BTB domain profile. 203 269 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02361 Pumo-Chr5 65892219 65897024 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02361 K10523 - gmx:100818306 841.647