Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02283 ATGGTGAAGGCCAAGCTCTCTCGTTTGAGAAGTGATCCTGTGCGGGTTGCAGCTTTCTGCTTCAGTAACCTCAAGAGAGCTCAGGTCCTTGATACTGACATTTCTTCAGCTGTTGACAAGATTTTGCAAAAAGAAATGGATGTTGAATCCTATAGAGTGCTGGGCTATCTTCTTCTTGGCATTATCAGAATATACTCCAAAAAGGTTGAATATGCGCTTGATGATTGCAATGAGGTGCTCGTTGAAATCAATAAATTTGTGGTCAATAATAATACAGTAAAGTTTGCCCGTGTGGAGACCTTGCGCATGTCTGTGACTATACCAGACAGATTAGAGTTGGATGCCTTTGAGTTGGATGAACTTGAAGATGCTGGCAGAGGCCATACTGCTCCTCAAGAAGAAATTACTCTTAAAGACAAAGAGGTTGTGTATAAAACTGAGGGATTTGGGCTGTTTTCTCACGAGAAGTTTGAGGAGTTTGATGTCGGTGAAAATACCAGCTCTTTTGATCACGATATAGTGGGAAATGCTTTTCTAGCTAAACTGTTGGATATGATGGACATTGAAGTTTCTCCACAAAATAGTCCAACTGATTTACCGGAAAGCAGGGATGAATTTCAAAGCAGCATATTTTCGCAGAAGGAACCAATGAACATTGACAGTGTTATAATAGTAAAAGAACTAGAAAAAGAATCTGTCAATTTGTCTGGTCAAGATCAACGAATTATTGAGGATCGGACAGTTGAAGATATTGACTCATGTGAAGATGAAATACATGAAGAAAGTAGTAGAATCTCTCAAGAGGAATCTATAGATATCAGTCTCTTTTCTGGGAGAGAGAAGGAACATGTGTTACCTGTTGAAACATTTAATGAGTCTCATCAAGTTGACACCGATCATAGTTCTGCCAAGGAAACATCAAGCTCATTATGCATAATGAATCAGGAAACTATTGAAGTTCATGAGGCAAGAAGTTTTCAAGAAAGTATAGAAAAGCCTCAGGATGAAAAATCCTATGAAAATGAAGGTGTGTGCCATGGCAATTCATCTGTTACCAATGAGATCCATGGAGAGCTCATTGAAGGGCCTGTTGAAAAGCATGATAACAAAGGAAAATTAGGGTTTCAAGAAAAGGTTTCACTTGAAGATGAAAGGCTTAGTGTTATTCCACCAAAGTCAAAAAATAATAATGCAACTCCTCAGTCTAAGTTTCAAGGTGATTCAGTTGGAAGACCAAAACGAGATTCTACTACACCAGAGTCGATGCATATTTCTACACCAGCTGTGAGAGAGCACCCTCCCTTTTCAAGGAAAAGAAGAGTTGGCCTTGATAGAATGATTGTCCTGCCTAACGAGGTAGTTAGAAAGAGCTTATCGGATACAAAAGACTTAGTTCGTCTCCCAAACAAATCTTGTCTCCCAAAAGAATCCCGTCGTACTTTACTTACTGCGCACTGTGTGCAGAGACAGAGAGAATCTTCCATTTCCAGTCTTCCTAATAGATTCTATGAGCCTTTGCTTCCATGTTCTTCCTCTGAGCTTCAACTCATATTGTCTAAAAAGAAAATGAAAATACCAAAATCCCTTCGGATTGTGGAAACTTCACAGAATTTAGATGTGTCAGCAATCTCCAACTGTTGA 1641 0.3924 MVKAKLSRLRSDPVRVAAFCFSNLKRAQVLDTDISSAVDKILQKEMDVESYRVLGYLLLGIIRIYSKKVEYALDDCNEVLVEINKFVVNNNTVKFARVETLRMSVTIPDRLELDAFELDELEDAGRGHTAPQEEITLKDKEVVYKTEGFGLFSHEKFEEFDVGENTSSFDHDIVGNAFLAKLLDMMDIEVSPQNSPTDLPESRDEFQSSIFSQKEPMNIDSVIIVKELEKESVNLSGQDQRIIEDRTVEDIDSCEDEIHEESSRISQEESIDISLFSGREKEHVLPVETFNESHQVDTDHSSAKETSSSLCIMNQETIEVHEARSFQESIEKPQDEKSYENEGVCHGNSSVTNEIHGELIEGPVEKHDNKGKLGFQEKVSLEDERLSVIPPKSKNNNATPQSKFQGDSVGRPKRDSTTPESMHISTPAVREHPPFSRKRRVGLDRMIVLPNEVVRKSLSDTKDLVRLPNKSCLPKESRRTLLTAHCVQRQRESSISSLPNRFYEPLLPCSSSELQLILSKKKMKIPKSLRIVETSQNLDVSAISNC 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02283 546 Pfam N terminus of Rad21 / Rec8 like protein 17 90 IPR006910 GO:0005515
Pumo5g02283 546 PANTHER SCC1 / RAD21 FAMILY MEMBER 16 521 IPR039781 GO:0007062|GO:0008278
Pumo5g02283 546 MobiDBLite consensus disorder prediction 383 437 - -
Pumo5g02283 546 MobiDBLite consensus disorder prediction 390 406 - -
Pumo5g02283 546 MobiDBLite consensus disorder prediction 326 342 - -
Pumo5g02283 546 CDD Rad21_Rec8_M_AtSYN1-like 434 521 - -
Pumo5g02283 546 MobiDBLite consensus disorder prediction 326 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02283 Pumo-Chr5 61113773 61124341 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02283 K06670 - vum:124830678 306.605