Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02278 ATGAAAGGAAAGAGCAGGAGAAGTGGTGGTGCTGTCCATATGGAATACCTCATTCACATTCAGGAGATTAAGCCTTGGCCCCCATCACAATCTCTCAGACCGCTTCGTTCTGTATTGATACAATGGGAGAACGGTGAACGCTCTTCGGGGTCTACCGGTCTTGTTTCCCCTTCAGTTGGTCCTAATTCTGTTGCTGGTGAAGGAAAACTCGAGTTTAACGAGTCATTTAAGCTTCCTGTAACTCTGTCAAGGGATATGTCTATCAGAAATAGCACTGCTGATGTGTTCCAAAAGAATTGCTTGGAGTTCAACTTGTATGAAACTCGAAGAGATAAGACCACTAAAGGGCAGTTGCTGGGGACTGCCATCATAGACTTGGCAGATTGTGGCGTACTCAGAGAGACCTTGAGCATTCGAACGCCATTGAACTGCCAGAGGAACTACAGAAACACAGATCAGCCACTTTTGTTCATTCAAATTGAGCCAGTTGAAAAGAGTCGCCCTAAGTCCTCCTTGAAGAACAGCTTGTCAAAGGAGGTGTCAAAGGGAAATAATGGCAGTGAATCTGTATCAACATTGATGGATGGAGAGTATGCTGAGGAAGCTGAGATTGCCTCTTTTACTGATGACGATGTTTCCTCTCATTCATCTGCGGCTGCAGTCACTACTTCCTTTGAGTCTAGCACGTGTGTGCCTCCCGAACATGAAGAGGATGGACCAAATGGAGCAGCTCAAAACAGTGGTAGGAATGACAAGGAGCATCCCTTGGCCTCAGAGACAAGAGTTGAGAAGTTGAATGTGACAGAACAAGATGCATATGAGAGACTGGAGAGGATTTCTTCCTATGTGTCATCTATGGATGTGTCCTCTGAAGTTGGGAGTCCAGTAAATGGTCATACCTCTATTACAAGCACTCCCAATCATAGATCAGTGACAACCCCAAAGCAGGTTGCTCCTTCGAATGCCGATTCTTCTTCCCCAACCTTGGAGGAAAACTCTAAGAGCAGGTCCAGAAGCATTGAGCATGAAAATTTGGATCAGGAGGGTTGTGAAAAACTTGCCAATTGTAAAGATGTGGGTACAGGTGTTCAAATAAACAATAATGAAAGTGATTTTGACACCTATTCTAGCAACACCACATCTCTAGATAGTAATTACCTCGTGGACAAGAATCCAAGCTTTGGTTTGGAAACCAAAGACAAATTAAGTGAGAGTTGTGAGGAAGTTGACATAAGTCGTGTGCAGGAGGGGGGAAGTGATAAATATTACAGTTCCATTGAAGATAAGCACGGAAATGAATCTGATAAGCAATATCATGTAGAAGATGAATCAGTGGCACAAGGTGTGAAAGATCAAGTTATATTGAGTAGCAATTCATATTCTTTAAGTGGGTCAGATAATGGTATGAAAGGCAATGTTCTGAAAAATGAAAGATTAAAGCATGTGAGGTCTGTAAGGTCATCAGCAGACTCAGTTAGGACTATTGGGTCACTTGGTAACAATCATCTTGCTGACGTAAAGGAAAATGGTGTTAATGGAGATGCCCAAAATAATGGAGGGAACATTAGAAGTAGTGACAGAAAAGATGCCAAGGTTTATCCAAGGGAAGCCAGAAATTCCATTTTAGACAGCAAGATTGAGCACTTGGAAAACAAGATAAAGATGCTTGAAGGAGAGTTAAGAGAAGCTGCTGCTATTGAGGCTGCTTTATATTCGGTAGTTGCCGAGCATGGAAGCTCCATGAGTAAGGTTCATGCCCCAGCTCGGCGCCTTTCCAGGCTGTACCTTCATACTTGTAAAGAAAATCTTCAAGCAAGAAGGGCGGGGGCAGCTAAAAGTGCTGTTTCAGGATTAGTGCTTGTTGCAAAGGCATGTGGAAATGATGTCCCAAGGTTGACATTTTGGTTGTCTAATTCTATTGTGCTCAGAACAATTATAAGCAAAACTACCAAAGGCATGACACCATCTAATCCTTCTGGATCTAGTACAAGAAGGAAGAATGGAGAAGGGAATGGCAAGGTAACACAATCATTAATATGGAGGGGGTTCTCTCCTAGGAAAAACGAAAATACAGCTTTTGAATATGGAGGTATAGGTAACTGGGATGATCCAAATGTGTTCATATCAGCATTGGAAAAGGTGGAAGCTTGGATCTTCTCTCGCATTGTGGAATCTATTTGGTGGCAGTCTTTGACTCCACATATGCAGCTTGCTGATGCAAAGATCACCCGTCCGGATTCAGCGAAAAACTATAAAAATATGTCTAGCTCATGTGATCAAGAGCAGGGAAATTTATCACTAGATATTTGGAAGAATGCTTTTAGAGAAGCCTGTGAAAGGCTTTGTCCTATCCGAGCTGGAGGGCATGAGTGTGGCTGTTTGTCTGTGCTTCCTAGATTGATAATGGAGCAGTGTGTGGCAAGGTTAGATGTTGCTATGTTCAATGCCATTCTTCGGGAATCTGATGATGATATTCCGACTGATCCTGTATCTGATCCCATTAGTGATCCCAAAGTTCTCCCCATTCCACCTGGTAAATCAAGCTTTGGAGCTGGTGCACAGCTAAAAACTGCGATTGGTAACTGGTCTAGATGGCTGACTGACATATTTGGTATGGATGATGACGACTCACTTGAGGATAGAGATGATAATGACCTTGATAGCAATGATGGAAATCAAAATACTTTCAAGTCCTTTCATCTTCTTAATGCATTAAGCGACCTCCTGATGCTTCCTAAGGATATGCTCTTAAATGCAACCATCAGGAAAGAGGTGTGCCCAATGCTTTGTGCATCGCTAATCAAGAAGATTCTGGACAATTTTGTCCCAGATGAGTTTTGCCCTGATCCAATTCCCACTGATGTTTTTGAAGCTCTGGACTCACAGGATGATCTTGAGGATGGAAGTGAGTGTATCAACAACTTCCCCTGCAATGCAGCTCCCATTGTATATTCACCTCCACCAGCAACTACCATTACAAGCATTACTGGGGAGATTGGAAGCGAATCTCAGCTGAGAAGAAGCAAATCTTCCGTTGTTAGGAAGTCATACACCAGTGATGATGAGCTCGATGAACTAAACTATCCAATATCTTCAATATTGAATAGTGGCTCCTCCTCACCTGCATCAACAAAGTCCAATTGGAAGTGGAAAGAAAGTCGCGATGAATCTGCCATCAGATATGAACTCCTCAGGGAAGTTTGGATGAACAGTGAATGA 3219 0.4284 MKGKSRRSGGAVHMEYLIHIQEIKPWPPSQSLRPLRSVLIQWENGERSSGSTGLVSPSVGPNSVAGEGKLEFNESFKLPVTLSRDMSIRNSTADVFQKNCLEFNLYETRRDKTTKGQLLGTAIIDLADCGVLRETLSIRTPLNCQRNYRNTDQPLLFIQIEPVEKSRPKSSLKNSLSKEVSKGNNGSESVSTLMDGEYAEEAEIASFTDDDVSSHSSAAAVTTSFESSTCVPPEHEEDGPNGAAQNSGRNDKEHPLASETRVEKLNVTEQDAYERLERISSYVSSMDVSSEVGSPVNGHTSITSTPNHRSVTTPKQVAPSNADSSSPTLEENSKSRSRSIEHENLDQEGCEKLANCKDVGTGVQINNNESDFDTYSSNTTSLDSNYLVDKNPSFGLETKDKLSESCEEVDISRVQEGGSDKYYSSIEDKHGNESDKQYHVEDESVAQGVKDQVILSSNSYSLSGSDNGMKGNVLKNERLKHVRSVRSSADSVRTIGSLGNNHLADVKENGVNGDAQNNGGNIRSSDRKDAKVYPREARNSILDSKIEHLENKIKMLEGELREAAAIEAALYSVVAEHGSSMSKVHAPARRLSRLYLHTCKENLQARRAGAAKSAVSGLVLVAKACGNDVPRLTFWLSNSIVLRTIISKTTKGMTPSNPSGSSTRRKNGEGNGKVTQSLIWRGFSPRKNENTAFEYGGIGNWDDPNVFISALEKVEAWIFSRIVESIWWQSLTPHMQLADAKITRPDSAKNYKNMSSSCDQEQGNLSLDIWKNAFREACERLCPIRAGGHECGCLSVLPRLIMEQCVARLDVAMFNAILRESDDDIPTDPVSDPISDPKVLPIPPGKSSFGAGAQLKTAIGNWSRWLTDIFGMDDDDSLEDRDDNDLDSNDGNQNTFKSFHLLNALSDLLMLPKDMLLNATIRKEVCPMLCASLIKKILDNFVPDEFCPDPIPTDVFEALDSQDDLEDGSECINNFPCNAAPIVYSPPPATTITSITGEIGSESQLRRSKSSVVRKSYTSDDELDELNYPISSILNSGSSSPASTKSNWKWKESRDESAIRYELLREVWMNSE 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02278 1072 Coils Coil 539 566 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 173 191 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 288 333 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 651 672 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 209 230 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 168 191 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 288 346 - -
Pumo5g02278 1072 ProSiteProfiles C2 NT-type domain profile. 4 164 IPR019448 -
Pumo5g02278 1072 Pfam N-terminal C2 in EEIG1 and EHBP1 proteins 14 129 IPR019448 -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 208 269 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 252 269 - -
Pumo5g02278 1072 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP205 536 1069 IPR021827 GO:0005643
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 1034 1055 - -
Pumo5g02278 1072 MobiDBLite consensus disorder prediction 506 530 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02278 Pumo-Chr5 60908518 60914993 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02278 - - gmx:100783487 1845.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02278 5 60908518 60914993 Pumo5g02278 5 60908518 60914993 ECH