Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02260 ATGGCTGCCTCATCCTCCCTCTCCACCCTCTTCTCCTTTCTCCTCCCACCAAAGCCACAACCACCTTCCTTCTTCGCTCGCTTCCCACTTCAGAGCCACAAACTACGTGCCCAACAACAGGATGATCATGAGCATGAGTTGTCCTCGGTGATGAACCCGTCCCATGCGCACGCGAAGATGCTCTTCTTCCGGTCGGGGTACAACGTGCAGGTGGTGGTGGACGAGAACGAGCCCGAGGAGAGGCTGCTCAACAGGTTCCGGAGAGAGGTCATGAGAGCTGGGGTCATTCAAGAGTGCAAGAGGAGACGGTTCTTCGAGAACAAGCAGGAGGAGAAGAAGCGCAAGTCCCGCGAAGCTGCCAAGCGTAAAAGCAGAAGCAGGCGCTTTCAATCGAGATTTCAACCACAAAACAAGCCGGATGTTGCACCAACCAAGAAGGAAGAGGATGATGACAACTGGGATCTTCCAGAAGTAGACGCTCCATATATTTCAACCGCATGA 501 0.5389 MAASSSLSTLFSFLLPPKPQPPSFFARFPLQSHKLRAQQQDDHEHELSSVMNPSHAHAKMLFFRSGYNVQVVVDENEPEERLLNRFRREVMRAGVIQECKRRRFFENKQEEKKRKSREAAKRKSRSRRFQSRFQPQNKPDVAPTKKEEDDDNWDLPEVDAPYISTA 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02260 166 NCBIfam 30S ribosomal protein S21 69 125 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 PRINTS Ribosomal protein S21 family signature 72 80 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 PRINTS Ribosomal protein S21 family signature 104 114 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 PRINTS Ribosomal protein S21 family signature 80 89 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 PRINTS Ribosomal protein S21 family signature 92 102 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 Hamap 30S ribosomal protein S21 [rpsU]. 68 124 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21 1 162 IPR001911 GO:0003735|GO:0005840|GO:0006412
Pumo5g02260 166 Gene3D Ribosomal protein S8 83 121 IPR038380 -
Pumo5g02260 166 MobiDBLite consensus disorder prediction 104 166 - -
Pumo5g02260 166 Pfam Ribosomal protein S21 70 123 IPR001911 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02260 Pumo-Chr5 60698592 60700532 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02260 - - gmx:100780245 238.424