Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02257 ATGTCTATGAACAACAACCCTTCCAAGCCCCCTGGGGCCTCTTCCTCCGGCTACCCACATTCCCAAATTGCCCCTGGCCAGTACCCCCTCTCCCAGGCCCACGCCATCGTCCAAGCCCAGTTCCAGGCCCAGCTCCAAGCCCACGGGCTCACCCTCAACCCCAACGCCAACGCCAACGCCAAACGTTTCCCTCCCAAACCCCCTATCTACACCCTCACGCCGTTTAAACAAACGGAACCCGCACTCGGCCCTCGCAGAAAGAAGCACAAGCCCAACGAGAAACAGCTTCCTGAGAAAGCCTCTGCAATTCTCCCAGAGTCAGCGCTCTACACGCAGCTTCTCGATGTCGAAGCGCGTGTGGACGCTGCACTCGCGAGAAAGAAGGTTGACATTCAGGAAGCGCTGAAAAACCCACCCTGCATCCAGAAAACCCTAAGAATCTTCGTGTTCAACACGTTCGCGAACCCGAATCACGCGGATTCTTCGACTGCCACGTGGACTCTTAAGATAGTTGGGAGAATTTTGGAAGATGGTGAAGACCCTGAACAGGCAGGGGTTTTTGCTCAGAGGATGCCCCCTTTGTATCCTAAATTCTCCGCCTTTTTTAAGAGAGTAACGATTACCCTCGACAAGAGGCTGTATCCGGACAACAGTGTCATCACGTGGGAGAATTCGCGGTCCTCTGCGCCTCAAGAAGGTTTTGAGGTGAAGAGGAAAGGGGATAAGGAGTTCCCTGTGCAGATTCGGTTGGAGATGAACTATGTGCCGGAGAAGTTTATGCTCTCGCCCGCGTTGAGAGAGGTGCTTGGAATTCAGGTTGACACGCGGGCGAGGATTGTTTCGGCTATCTGGCATTATGTGAAGGCGAGGAAACTGCAGAACCCGAATGACCCTTCGTTCTTTCACTGCGATCAGGCTCTGCAGAAGGTGTTTGGGGAGGATAAGGTGAAGTTCATGATGGTTTCGCAGAAGATTTCGCATCATTTGTTTCCTCCCCAGGTTATACTTTTGGAGCATATGATCAAGCTCTCGGGGAATAGTCCGGTTGGGTCTGCCTGTTATGATGTGATGGTTGATGTTCCTTTTCCCATTCAGAGGGAGTTGAATGCTTTGGCGGCCAATATGGAGAGGAGCAAAGAGATTGATGCGTGTGATGAGTCCATATGCGGAATCATTAGAAAAATACACGAGCACCGAAGGAGGCGAGCGTTCTTTGTTGGTTTTAGTCAGTCTCCTCTGGAATTTATTAAGGCCTTGGTTGAATCTCAAAACAAGGATCTGAAAGTTTTACTTGGAGAATCTGGTCACAATGCTGAAAAGGACCGCAAATCAGATTTCTTTAAGCAACCATGGGTTGAGGATGCTATTGTGCGCTATTTGAATCACAAACCAGCTGCAGGAAGCAATGCTCCAGGGAGCACATGA 1425 0.5081 MSMNNNPSKPPGASSSGYPHSQIAPGQYPLSQAHAIVQAQFQAQLQAHGLTLNPNANANAKRFPPKPPIYTLTPFKQTEPALGPRRKKHKPNEKQLPEKASAILPESALYTQLLDVEARVDAALARKKVDIQEALKNPPCIQKTLRIFVFNTFANPNHADSSTATWTLKIVGRILEDGEDPEQAGVFAQRMPPLYPKFSAFFKRVTITLDKRLYPDNSVITWENSRSSAPQEGFEVKRKGDKEFPVQIRLEMNYVPEKFMLSPALREVLGIQVDTRARIVSAIWHYVKARKLQNPNDPSFFHCDQALQKVFGEDKVKFMMVSQKISHHLFPPQVILLEHMIKLSGNSPVGSACYDVMVDVPFPIQRELNALAANMERSKEIDACDESICGIIRKIHEHRRRRAFFVGFSQSPLEFIKALVESQNKDLKVLLGESGHNAEKDRKSDFFKQPWVEDAIVRYLNHKPAAGSNAPGST 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02257 474 ProSiteProfiles SWIB/MDM2 domain profile. 254 331 IPR003121 -
Pumo5g02257 474 MobiDBLite consensus disorder prediction 1 26 - -
Pumo5g02257 474 Gene3D SWIB/MDM2 domain 251 334 IPR036885 -
Pumo5g02257 474 MobiDBLite consensus disorder prediction 81 96 - -
Pumo5g02257 474 SMART swib_2 255 334 IPR019835 -
Pumo5g02257 474 MobiDBLite consensus disorder prediction 74 96 - -
Pumo5g02257 474 Pfam SWIB/MDM2 domain 258 329 IPR003121 -
Pumo5g02257 474 SUPERFAMILY SWIB/MDM2 domain 249 339 IPR036885 -
Pumo5g02257 474 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 89 428 - -
Pumo5g02257 474 CDD SWIB_like 261 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02257 Pumo-Chr5 60636884 60639373 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Pumo5g02257 SWIB 5.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02257 K11650 - gmx:100785069 818.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02257 5 60636884 60639373 Pumo5g02257 5 60636884 60639373 ECH