Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02178 ATGATGATGAATTATTTCCCCGACGAGGTAATAGAGCACATATTTGACTATGTGGTGTCACACCGTGACCGGAACGCTTTGTCTTTGGTGTGTAAGAGTTGGTACAGGATAGAGAGGTTTACGAGGCAGAGGGTGTTCATAGGGAACTGTTACTCCATCACTCCAGAGAGGTTGATCCAGAGGTTTCCTGGTCTAAAGTCTTTGACTTTGAAGGGAAAGCCTCATTTTGCTGACTTCAGTTTGGTACCATATGATTGGGGTGGCTTTGTGTATCCGTGGATTGAGGCACTGGCCAAGAGTAGGGTTGGGTTGGAGGAGCTTAGGCTGAAGAGGATGGTGGTCTCGGATGAGAGCCTGGAGCTACTTTCTCGTTCTTTCACACACTTCAAGTCTTTGGTTCTTGTTAGCTGTGAAGGGTTCACCACCGATGGCCTTGCTGCTATAGCTGCAAATTGCAGGTTTCTTAGGGAGCTGGATCTGCAAGAAAATGAAGTCGAAGATCACAAAGGCCAGTGGCTAAGTTGCTTTCCTGATAGCTGTACATCACTTGTTTCGCTTAATTTTGCTTGCCTTAAAGGAGAGGTTAGTTTGGGAGCTCTAGAGAGACTTGTGGCCAGATCTCCTAACCTGAAGAGTTTAAAGCTGAATCGTGCGGTGCCCCTTGATGCACTGCAAAGGATAATGATGCGAGCACCTCAACTGGCAGATTTGGGTATTGGATCATTTGTCCATGATCCAGAATCAGAGGCCTACATAAAGTTTAAGAATACCATTCTCAAGTGCAAGTCCATAACCAGTTTGTCAGGGTTTTTGGAAGTTGCTCCTCACTGTCTTGAAGCTATATATCCCATTTGCCCTAACTTAACATCCTTGAACTTGAGCTATGCAGCAGGCATTCAGGGCAATGATCTGATAGAACTAATTCAACACTGTGTGAAACTTCAGCGCTTATGGATAATGGATTGCATTGGAGACAAAGGACTAAGTGTTGTAGCTGATACATGTAAAGATTTGCAAGAATTGAGGGTTTTTCCATCTGCTCCCTATGGAAATCCTGAAGCTCCTGAAGCTGTCACAGAAATAGGGCTGGTTGCAATATCGGCGGGTTGCCCTAAGCTTCACTCATTACTCTACTTCTGCCACCAGATGACAAATGCTGCACTCATAACAGTGGCTAAGAACTGCCCGAATTTTATCCGATTCAGGTTGTGTATCCTTGATGCAATAAAACCTGACCCTGATACAATGCAGCCACTGGATGAAGGTTTCGGTGCAATTGTGCAGTCTTGCAGGCGACTCAGGCGCCTATCACTCTCGGGGAAATTGACTGACCAGGTTTTCCTTTACATTGGAATGTATGCTGAGAAGCTTGAAATGCTGTCTATTGCATTTGCTGGGGATAGTGACAAGGGAATGCTCTATGTGTTGAATGGATGCAAGAAGCTTCGGAAGCTTGAGATAAGAGACTGCCCTTTCGGCAACATGGCACTTCTGACGGACGTAGGGAAGTATGAAACAATGCGATCCCTTTGGATGTCGTCCTGTGAAGTGACCGTCGGAGCCTGCAAGTTGCTAGCAAAGAAGATGCCAAGGTTGAATGTGGAGATCTTCAATGAGAATGAGCAAGAAGATTGTAGTCTGGAAGATGGGCAGAAGGTAGAGAAGATGTATTTGTATCGTACATTGGCTGGGAAAAGGAAAGATGCACCAGAATATGTATGGACTCTGTAG 1731 0.4541 MMMNYFPDEVIEHIFDYVVSHRDRNALSLVCKSWYRIERFTRQRVFIGNCYSITPERLIQRFPGLKSLTLKGKPHFADFSLVPYDWGGFVYPWIEALAKSRVGLEELRLKRMVVSDESLELLSRSFTHFKSLVLVSCEGFTTDGLAAIAANCRFLRELDLQENEVEDHKGQWLSCFPDSCTSLVSLNFACLKGEVSLGALERLVARSPNLKSLKLNRAVPLDALQRIMMRAPQLADLGIGSFVHDPESEAYIKFKNTILKCKSITSLSGFLEVAPHCLEAIYPICPNLTSLNLSYAAGIQGNDLIELIQHCVKLQRLWIMDCIGDKGLSVVADTCKDLQELRVFPSAPYGNPEAPEAVTEIGLVAISAGCPKLHSLLYFCHQMTNAALITVAKNCPNFIRFRLCILDAIKPDPDTMQPLDEGFGAIVQSCRRLRRLSLSGKLTDQVFLYIGMYAEKLEMLSIAFAGDSDKGMLYVLNGCKKLRKLEIRDCPFGNMALLTDVGKYETMRSLWMSSCEVTVGACKLLAKKMPRLNVEIFNENEQEDCSLEDGQKVEKMYLYRTLAGKRKDAPEYVWTL 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02178 576 Gene3D Ribonuclease Inhibitor 43 576 IPR032675 -
Pumo5g02178 576 SMART fbox_2 6 47 IPR001810 GO:0005515
Pumo5g02178 576 FunFam Transport inhibitor response 1 2 42 - -
Pumo5g02178 576 SUPERFAMILY F-box domain 2 38 IPR036047 GO:0005515
Pumo5g02178 576 Gene3D - 1 42 - -
Pumo5g02178 576 SUPERFAMILY RNI-like 62 538 - -
Pumo5g02178 576 CDD F-box_AtTIR1-like 3 42 - -
Pumo5g02178 576 SMART LRR_CC_2 370 394 IPR006553 -
Pumo5g02178 576 SMART LRR_CC_2 285 310 IPR006553 -
Pumo5g02178 576 SMART LRR_CC_2 126 151 IPR006553 -
Pumo5g02178 576 SMART LRR_CC_2 430 453 IPR006553 -
Pumo5g02178 576 SMART LRR_CC_2 311 334 IPR006553 -
Pumo5g02178 576 SMART LRR_CC_2 479 504 IPR006553 -
Pumo5g02178 576 SMART LRR_CC_2 101 125 IPR006553 -
Pumo5g02178 576 FunFam Transport inhibitor response 1 43 576 - -
Pumo5g02178 576 Pfam Transport inhibitor response 1 protein domain 63 109 IPR041101 -
Pumo5g02178 576 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 85 535 - -
Pumo5g02178 576 Pfam F-box 4 43 IPR041567 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02178 Pumo-Chr5 58809092 58812978 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02178 - - gmx:100812516 1097.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02178 5 58809092 58812978 Pumo5g02178 5 58809092 58812978 ECH