Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02141 ATGAGCAGTTGGAGAAGCCTTCTTCTACGAATCGGGGACAAGAGCCCCGAATACGGAGCCTCCTCCGACTACAAAGATCACATTGACACGTGCTTTGGCGCCCTTCGCCGCGAGCTCGACCACTCCCAATCCGAGATTCTCGAGTTCCTTTTCGCATGTGCTGAGCAATTGTCTCACAAGATTCCTTTGTATGGAACCCTGATTGGCTTAATTAACTTGGAAAATGAGGACTTTGTGAAACAACTAGTGGAGAAAACTCAAACTAAATTTCAGGATGCCTTAGATTCTGGAAACTGCAACGGGGTTCGTATTCTAATGCGGCTTTTGACTGTTATGATGAGCAGTAAGGTTCTTCAACCAAGCTCTTTGGTGGCTGTCTTTGAAACATTTTTATCATCAGCTGCCACAACAGTAGATGAGGAAAAAGGAAATCCCTTATGGCAACCATGTGCTGACTTTTACATAACTTGCATTTTATCATGCCTTCCATGGGGCGGAGCAGAACTTATTGAGCAAGTTCCTGAAGATATTGAGAGAGTGATGGTTGGAGTAGAAGCTTACTTGAGCATCAGAAAGCATACATCTGATACTGGTTTATCCTTTTTCGAGAATGATGATGAAAATGGGAAAGGTCTCAGTGACAAGGATTTTTTGGAAGATTTATGGGATAGAATACAGGTTTTATCAAGCAACGGATGGAAAGTTGAAAGTGTTCCAAGACCTCATCTTTCATTTGAAGCTCAGCTGGTTGCTGGGAAGTCTCATGAATTTGGACCAGTAAGCTGCCCCAGCTTACCAAGCCCACCTTCAGTCCCTTCTGGTGTGTCTATTGGTAAACAGAAGCATGAAGCAGAATTAAAATACCCTCAAAGGATACACCGGCTAAACATATTTCCTCCTAGTAAACATGAGGATCTACAGCCTATAGACAGATTTGTTATGGAAGAGTATCTTCTAGACGTGCTTCTGTTCTTAAATGGCTGTCGAAAGGAATGTGCTTCTTTCATGGTTGGCCTGCCAGTTTCCTTCAGATACGAGTACCTCATGGCTGAGACAATATTCTCTCAGCTGCTGATGCTACCACAACCACCTTTCAAACCAGTATATTACACACTGGTTATTATTGACCTTTGTAAGGCTCTTCCTGGAGCTTTTCCTGCAGTTGTGGCTGGAGCAGTTCGTACTCTCTTTGAGAAGATTGCTGATTTGGATATGGAGTGTCGGATACGTCTGATCCTTTGGTTCTCACACCATTTATCAAACTTCCAGTTCATCTGGCCATGGGAAGAGTGGGCTTATGTCCTAGACCTCCCAAGGTGGGCCCCTCAACGCGTCTTTGTTCAGGAGGTTTTGGAGAGGGAAGTTCGCTTGTCATACTGGGACAAAGTTAAGCAGAGTATTGAAAATGCACCTGGTTTAGAAGAATTGCTTCCTCCAAAGGGTGGGCCGAACTTTAGTTTTGGTGCAGAAGATGGTAAAGAAAGCAATGAACATGTACTGTCTGGACAGCTCAACAACATGGTTAAAGGGAAGGCACCTGTCCGTGAAATAATCTCATGGATTGATGAAAGTGTGTTTCCAAATAATGGTCTAGAAGTTACCCTCAGAGTGGTTGTACAAACACTTCTCAATATTGGATCCAAGAGTTTCACTCATTTGATGACTGTCTTAGAGAGATATGGGCAAGTCTTTGCAAAAGTATGTCCTGACCAGGATAAGCAAGTCATGCTGATAGTTGAAGTGAGTTCTTTCTGGAAGAGTAACACCCAAATGACAGCAATAGCAATTGACAGGATGATGGGTTATCGACTTGTTTCAAATCTGGCTATTGTGAGATGGGTCTTCTCACCAGAAAATATTGAGCAATTTCATACATCAGATCGTCCATGGGAGATTCTTAGAAATGCAGTAAGCAAGACACACAATCGTATTTCTGATCTAAGGAAAGAAATATTATCTCTTAAAAAGAATATTTCATCAGCTGAAGAAGCTGCCAAGGAGGCAAAAGCAGAGTTAGATGCTGCAGAGTCAAAACTTACACTAGTGGATGGTGAACCAGTTCTTGGTGACAATCCTGTTAGATTGAATAGATTGAAATCACATGCTGAAAAGACAACGGAGGAGGTGGTGTCTCTTCAAGAATCTTTAGAAGCTAAGGAAGCTCTTCTTGCCCGAGCAATTGAGGAAAATGAGGCATTGTTTCTCTTGTTGTACAAAAGCTTCTCAAACGTGTTGACAGAGCGCCTTCCTGAAGGAGCTAGAACACTGCATGAGTTGAAGTCTGCACAAGTTGATGTGGTGATGGCAGTGGACCCTGAAGAGCCATCATCGATGGAATTAGACAACGAGAATCAGAGACCTCAAAACAGTCAGACAAATGGGGAGAAGAAAGGTGGTGCTTATAATGTAGGTGAAAAGGAGCAGTGGTGTATCACCACTTTGGGCTATGTGAAGGCCTTTACTAGGCAGTATGCTGCTGAGATATGGCCCCATGTTGAAAAGTTGGATGCAGAGGTATTGACAGAAGATGCACCTCTTCTTTTTCGGTCAGCTGTTTATTCTGGTCTTCGAAGACCACTTCACGAGGCTTGA 2592 0.4317 MSSWRSLLLRIGDKSPEYGASSDYKDHIDTCFGALRRELDHSQSEILEFLFACAEQLSHKIPLYGTLIGLINLENEDFVKQLVEKTQTKFQDALDSGNCNGVRILMRLLTVMMSSKVLQPSSLVAVFETFLSSAATTVDEEKGNPLWQPCADFYITCILSCLPWGGAELIEQVPEDIERVMVGVEAYLSIRKHTSDTGLSFFENDDENGKGLSDKDFLEDLWDRIQVLSSNGWKVESVPRPHLSFEAQLVAGKSHEFGPVSCPSLPSPPSVPSGVSIGKQKHEAELKYPQRIHRLNIFPPSKHEDLQPIDRFVMEEYLLDVLLFLNGCRKECASFMVGLPVSFRYEYLMAETIFSQLLMLPQPPFKPVYYTLVIIDLCKALPGAFPAVVAGAVRTLFEKIADLDMECRIRLILWFSHHLSNFQFIWPWEEWAYVLDLPRWAPQRVFVQEVLEREVRLSYWDKVKQSIENAPGLEELLPPKGGPNFSFGAEDGKESNEHVLSGQLNNMVKGKAPVREIISWIDESVFPNNGLEVTLRVVVQTLLNIGSKSFTHLMTVLERYGQVFAKVCPDQDKQVMLIVEVSSFWKSNTQMTAIAIDRMMGYRLVSNLAIVRWVFSPENIEQFHTSDRPWEILRNAVSKTHNRISDLRKEILSLKKNISSAEEAAKEAKAELDAAESKLTLVDGEPVLGDNPVRLNRLKSHAEKTTEEVVSLQESLEAKEALLARAIEENEALFLLLYKSFSNVLTERLPEGARTLHELKSAQVDVVMAVDPEEPSSMELDNENQRPQNSQTNGEKKGGAYNVGEKEQWCITTLGYVKAFTRQYAAEIWPHVEKLDAEVLTEDAPLLFRSAVYSGLRRPLHEA 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02141 863 Coils Coil 695 729 - -
Pumo5g02141 863 Pfam MIF4G like 343 467 IPR015172 GO:0016070
Pumo5g02141 863 MobiDBLite consensus disorder prediction 781 797 - -
Pumo5g02141 863 Pfam MIF4G domain 21 208 IPR003890 GO:0003723|GO:0005515
Pumo5g02141 863 Coils Coil 637 685 - -
Pumo5g02141 863 Gene3D - 490 849 - -
Pumo5g02141 863 Gene3D - 3 269 - -
Pumo5g02141 863 Pfam MIF4G like 500 827 IPR015174 GO:0016070
Pumo5g02141 863 MobiDBLite consensus disorder prediction 774 800 - -
Pumo5g02141 863 SUPERFAMILY ARM repeat 2 296 IPR016024 -
Pumo5g02141 863 FunFam Nuclear cap-binding protein 296 481 - -
Pumo5g02141 863 FunFam Nuclear cap-binding protein subunit 1 3 269 - -
Pumo5g02141 863 SUPERFAMILY ARM repeat 478 845 IPR016024 -
Pumo5g02141 863 Gene3D - 299 481 - -
Pumo5g02141 863 SMART if4_15 1 229 IPR003890 GO:0003723|GO:0005515
Pumo5g02141 863 PANTHER CAP BINDING PROTEIN 3 852 IPR027159 GO:0000339|GO:0005846|GO:0006406
Pumo5g02141 863 SUPERFAMILY ARM repeat 294 478 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02141 Pumo-Chr5 58102098 58123842 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02141 K12882 - gmx:100811738 1627.84