Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02092 ATGAAAAACAGCGCGTGCTTCGAGTGCGGCCAGAAGGGTCACTGGCGCCAGGACTGTCCCCTCAAATCCTCTAATGCCAGACCCTTCAACAACAACGATTCCCAATACGCCAAGGACATATGGTGCCGCTGCGGTCATGGCCTTTGCGAAGTGAAAACCTCAAAGAGTGACAAAAACCCGGGCAGGAAGTACTACGCTTGTCCCATCAAAAGGGGGGCAAGATGTAATAATGGTTTTGTTAAGTGGTGCGATGATCCCGTTGTTGAGATTGATTCGCAGCCTCCTCCGCCGTTTAAGTATCCTGAATGTCAATGTCCTGCTGGAGTGTGTAGAAGGGAGAAGGCAACAGACAACCTTCATGGCGTTAGATACTATTTTGCTTGCCCAATTAAACAGGGCCATGGATCTTGCGGTTACAAGGTGTGGGAGGATGAGCTGCTACATAATGAAAGCCCTGTGCGGCAAAGCTTTAGCTGTAAAAGATCTCTTAATGGTTTTGAAGATGATCAAGATGACAATGACTTGGATGAGGGTGGTAAGTTGCTAGTAAATCATTCCAAAAAGATGAGAATCTTGGACATTTCTGAGGAACCAACATTGATGGCTATATCTGAGGCTGAGCTTTCACAGAGTGAAGATGAAGCACTAGAGAAAGCATCGCAATTATCTTGCCCATCAGAATCAACTCCTTCGAGGATCAGTGGTCGACAGCATGTGTTTCCAAGGCACATTTTTGCTGGTGCTGGTGCTGGTGCTGGTGCTGATCCATCATTTGATTCTTCACCATTGGGTTGGTTAGGTCACCTTCTCTTCAGTCCACCACAAAGCTTGAAATCCCCCTCATCTCAGTCAACTCAGTCAATTTTCTGCTATGTTCCAAAACAAGCAAGTATTGCTGATGAACATAGCCAGCTTGATGCTATTAGTCTCAGTCAACAAACCCAACTTTCAAGTAGTTGCTATACTGAGTTATCTAAAGATGCTTTTAGCCCCAACAAATCACCAAACAGTGAAAGAAAACTAATGTCAAGGGCACAAAAGCAAAGACAAGTGGCCTTCGTTGCACAACAGCAGCTCCTCATTGATCTAGTAACCTTGAAGCCTCACGAGCATGAGTCCATGAAAGAGGCAGCAGAAGACACTTTTGCTCTATTAGATAATTTGGGTGCAAATGATACACAATTTTCTGAGCATGTCTGGGATTTCATAAATCTCACATCATCAATTGCACAAATGACTAAATCCATTGAAAATTCCCTTTCTCCTGAGGAGCACAACAAATGTCTTGAGGAGGAGAAGGCCAAATTTGTTCACATTCACAACCTCTATGAGAAGACCGAAGCTCAGTTCCAAGCCTCTGATCAACGTAGGCAATCACTTTGCAAAGAGATCTCTCACTTTGAAGCCATACTTTTTGAGAAACAAAACCAATTGAAGTCCTATGAATTGGAAACTTCAAACATAGAAATGGAACTTGGTGATTTGAAAAGAAATATGTTGGAAGCAGATACAGCCTTGAAGGCTAGAACTGAGCAACCAAAGATTGCTAGTAAACTGAGGGAAGAGAGGCAAGCCAAACAAATTGCAGCCAAATCAGCACTCGAGAAGGCCCTACTTGAATTACAATATTAA 1632 0.4357 MKNSACFECGQKGHWRQDCPLKSSNARPFNNNDSQYAKDIWCRCGHGLCEVKTSKSDKNPGRKYYACPIKRGARCNNGFVKWCDDPVVEIDSQPPPPFKYPECQCPAGVCRREKATDNLHGVRYYFACPIKQGHGSCGYKVWEDELLHNESPVRQSFSCKRSLNGFEDDQDDNDLDEGGKLLVNHSKKMRILDISEEPTLMAISEAELSQSEDEALEKASQLSCPSESTPSRISGRQHVFPRHIFAGAGAGAGADPSFDSSPLGWLGHLLFSPPQSLKSPSSQSTQSIFCYVPKQASIADEHSQLDAISLSQQTQLSSSCYTELSKDAFSPNKSPNSERKLMSRAQKQRQVAFVAQQQLLIDLVTLKPHEHESMKEAAEDTFALLDNLGANDTQFSEHVWDFINLTSSIAQMTKSIENSLSPEEHNKCLEEEKAKFVHIHNLYEKTEAQFQASDQRRQSLCKEISHFEAILFEKQNQLKSYELETSNIEMELGDLKRNMLEADTALKARTEQPKIASKLREERQAKQIAAKSALEKALLELQY 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02092 543 Gene3D - 1 32 - -
Pumo5g02092 543 MobiDBLite consensus disorder prediction 215 233 - -
Pumo5g02092 543 SMART c2hcfinal6 5 21 IPR001878 GO:0003676|GO:0008270
Pumo5g02092 543 MobiDBLite consensus disorder prediction 211 233 - -
Pumo5g02092 543 Pfam GRF zinc finger 41 85 IPR010666 GO:0008270
Pumo5g02092 543 Coils Coil 478 498 - -
Pumo5g02092 543 ProSiteProfiles Zinc finger GRF-type profile. 42 86 IPR010666 GO:0008270
Pumo5g02092 543 ProSiteProfiles Zinc finger CCHC-type profile. 6 20 IPR001878 GO:0003676|GO:0008270
Pumo5g02092 543 Pfam Zinc knuckle 5 20 IPR001878 GO:0003676|GO:0008270
Pumo5g02092 543 Coils Coil 516 536 - -
Pumo5g02092 543 PANTHER OS07G0190500 PROTEIN 94 499 - -
Pumo5g02092 543 SUPERFAMILY Retrovirus zinc finger-like domains 2 26 IPR036875 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02092 Pumo-Chr5 57385308 57389004 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02092 - - gsj:114399244 670.618