Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02076 ATGGCGCTATCCACCGCGGCCTCACCGCCTCCGGCGTTAGAAGAGGAGCCGTTACCTCACGACGGCGACGGTTACGACGTTAACGACGACGACGACGACGACGGCGGCGGCGCTTCGTTCGGCGTCGTTTCACTGGACGACGAGGGTTTCCCGTCGCAACTCCCCGGATCGGAAACGGCGTCGGAAAAGAGCAGTTTCGCCGCCGATTTCTATCGCTGCGGAACGGATTGGTCCTCGCTGTTGTCGCCAGAAGATAGTAAACAGAGCGATTTCGCGCAAGATTCGGGGAAGAAGCTGAAGCAGGCGAATCTGTTCCAGATTTGGGGCTTCAAAAGAAACGACGCCGTTGGTTCAGTTGAATCTGGTTCCAGTCGGAGTGGTTATTGTGATGGCGGAGGTGGTTCTTCTGAGAGGAAGATTGTGAAACCTGGAAATTGGGGTTCGATTTTGCGCGACACGGGGAAAGAGTTTGAGAATACGAAATCTTCTCGCAAGAGAAAGGGTTACGGTGGTGAAATTAGGGTTACACGTTCCTGTCCCTTTTATAAGAAAATCCCAGGGACAACGTTCACTGTTGATGCTTTTCGTTATGGGTATGTTGAAGGGTGCTCAGTGTATTTTCTTAGTCATTTCCATTGCGATCACTATGGTGGGCTTAGCAAGAAATGGTCACATGGCCCTATATATTGCTCTCCTCTCACGGGACGGCTTGTTCAAATGTGTCTCTCGGTAAATCCTTTGTATATCCACCCTTTGGAATTTAATACTGAACATTTGATTGATGGTGTCAAAGTGACTTTGTTAGAAGCTAATCATTGCCCTGGTGCAGCTTTGATTCACTTTGACCTCCCAAATGGCCAACGCTATTTGCACACTGGGGACTTTAGAGCATGTAAACTAATGCAAACTTACCATCTTCTTGCAAATCAACGTGTGAATGTACTTTATTTGGATACCACATATTGCAACCCAAAATACAGGTTCCCTTCCAAGGAAGATGTACTCAATTATGTTGTCAAAATTACAAAGAACCACCTCAAAACTCATCCCAGAACTTTAGTGGTTGTTGGGGCATACAGTATTGGCAAAGAATGCGTATATCTTGCAATTTCTAAGGCTCTTGGGGTAAAAATTTACGCAAATGCTTCAAGAAGACGGATTTTGCTAGCTTTTGGTTGGTCCGACCTTTCAGATAGACTCTGTACAAACGGAAATAACACAATTCTCCATGTTCTGCCCATGTCATCTTTGAGACTTGAGACCTTAAAAGATTACTTGAAGACCTACAAGGAGCAATTCACAGCAATTTTGGCATTTCGTCCAACAGGTTGGACTTTCAGTGAGAAGATAAGCAACGATCTGGAATTAATTAAACCTGTTTCCAAAGGAAATATTACGATATATGGGGTTCCCTACAGTGAGCACTCCAGCTTCACAGAACTGCGAGATTTTGTTCAGTTTTTGAGGCCTGACAAGATAATTCCAACTGTGAATGTCGGGAACGCTGCTAATAGAGAAAAGATGCAATCCTACTTCCGAGACTGGTTGAAGGGCTAA 1557 0.4554 MALSTAASPPPALEEEPLPHDGDGYDVNDDDDDDGGGASFGVVSLDDEGFPSQLPGSETASEKSSFAADFYRCGTDWSSLLSPEDSKQSDFAQDSGKKLKQANLFQIWGFKRNDAVGSVESGSSRSGYCDGGGGSSERKIVKPGNWGSILRDTGKEFENTKSSRKRKGYGGEIRVTRSCPFYKKIPGTTFTVDAFRYGYVEGCSVYFLSHFHCDHYGGLSKKWSHGPIYCSPLTGRLVQMCLSVNPLYIHPLEFNTEHLIDGVKVTLLEANHCPGAALIHFDLPNGQRYLHTGDFRACKLMQTYHLLANQRVNVLYLDTTYCNPKYRFPSKEDVLNYVVKITKNHLKTHPRTLVVVGAYSIGKECVYLAISKALGVKIYANASRRRILLAFGWSDLSDRLCTNGNNTILHVLPMSSLRLETLKDYLKTYKEQFTAILAFRPTGWTFSEKISNDLELIKPVSKGNITIYGVPYSEHSSFTELRDFVQFLRPDKIIPTVNVGNAANREKMQSYFRDWLKG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02076 518 FunFam DNA cross-link repair 1A 185 348 - -
Pumo5g02076 518 Gene3D - 185 497 IPR036866 -
Pumo5g02076 518 Gene3D - 327 475 - -
Pumo5g02076 518 FunFam DNA cross-link repair 1A 327 475 - -
Pumo5g02076 518 MobiDBLite consensus disorder prediction 1 65 - -
Pumo5g02076 518 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 176 509 - -
Pumo5g02076 518 SUPERFAMILY Metallo-hydrolase/oxidoreductase 201 511 IPR036866 -
Pumo5g02076 518 CDD SNM1A-1C-like_MBL-fold 174 324 - -
Pumo5g02076 518 Pfam DNA repair metallo-beta-lactamase 396 501 IPR011084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02076 Pumo-Chr5 57178967 57182797 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02076 K15340 - gmx:100790844 899.812