Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02063 ATGTTCCATTCGGCCGAAACTACGTTCCCTACTTGGGCTTTTGATCACATCAAGTACTTCAATGGGGGCAATGAAATTCAACTTCATCTTGACAAATACACTGGTACTGGCTTCCAGTCCAAAGGATCATACTTGTTTGGTCACTTCAGCATGAACATTAAGATGGTTCCTGGCGATTCAGCTGGCACAGTCACTGCTTTTTATTTATCTTCTCAAAACGCGGAGCACGATGAGATAGACTTTGAGTTCTTGGGGAACAGAACAGGACAACCTTACATTCTGCAAACAAATGTGTTCACCGGAGGCAAGGGTGACAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACAAAAGCATACCACAGATACTCTGTACTATGGAACATGTATCAAATTGTGTTCCTAGTGGATAACATCCCAATCAGGGTGTTCAAGAACCTCAAGGGCTTGGGAGTGAAGTTCCCCTTTGACCAACCCATGAAGGTGTACAACAGCTTGTGGAATGCTGATGACTGGGCCACAAGGGGTGGTTTGGAGAAAACAGATTGGTCCAAAGCTCCCTTCATTGCAGAGTACAAGGGGTTCCACATTGATGGGTGTGAAGCCTCAGTGAATGCCAGGTTCTGTGCCACACAGGGCAAGAGGTGGTGGGATCAAGCACAGTATCGTGACCTTGATGCTGCTCAATGGCGATGGCTCAGGTGGGTGCGCCAGAAGCACACCATCTATAACTACTGCACTGACAGGACCCGCTACCCTCAACTTCCACCTGAATGCAGAAGCAACCGTGACATTTAA 798 0.4712 MFHSAETTFPTWAFDHIKYFNGGNEIQLHLDKYTGTGFQSKGSYLFGHFSMNIKMVPGDSAGTVTAFYLSSQNAEHDEIDFEFLGNRTGQPYILQTNVFTGGKGDREQRIYLWFDPTKAYHRYSVLWNMYQIVFLVDNIPIRVFKNLKGLGVKFPFDQPMKVYNSLWNADDWATRGGLEKTDWSKAPFIAEYKGFHIDGCEASVNARFCATQGKRWWDQAQYRDLDAAQWRWLRWVRQKHTIYNYCTDRTRYPQLPPECRSNRDI 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02063 265 CDD GH16_XET 9 259 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo5g02063 265 PIRSF EndGlu_transf 2 264 IPR016455 GO:0010411|GO:0016762|GO:0042546
Pumo5g02063 265 ProSitePatterns Glycosyl hydrolases family 16 active sites. 78 88 IPR008263 GO:0004553|GO:0005975
Pumo5g02063 265 Pfam Glycosyl hydrolases family 16 10 185 IPR000757 GO:0004553|GO:0005975
Pumo5g02063 265 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 212 259 IPR010713 GO:0005618|GO:0016762|GO:0044042|GO:0048046
Pumo5g02063 265 SUPERFAMILY Concanavalin A-like lectins/glucanases 7 263 IPR013320 -
Pumo5g02063 265 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 2 192 IPR000757 GO:0004553|GO:0005975
Pumo5g02063 265 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 10 259 IPR044791 GO:0004553
Pumo5g02063 265 FunFam Xyloglucan endotransglucosylase/hydrolase 2 261 - -
Pumo5g02063 265 Gene3D - 2 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02063 Pumo-Chr5 56918393 56920125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02063 9 265 Glycoside Hydrolase AT5G13870 80.934 1.15e-165 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02063 K08235 - gmx:100779122 543.117