Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02061 ATGGGGGCGAGCAGCGACCCGACCCAAGATGGTTCGGACGAGCAGCAGAAGCGTTCGGAAATCTACACGTACGAGGCCCCCTGGCACATCTACGCCATGAACTGGAGCGTCCGGCGCGACAAGAAGTACCGCCTGGCCATCGCCTCCCTCCTGGAGCAGTACCCGAACCGAGTCGAGATCGTCCAGCTCGACGACTCCAACGGCGAGATCCGCTCCGACCCCTCCCTCTCCTTCGAGCACCCCTACCCTCCCACCAAGGCCATCTTCATCCCCGACAAGGACTGCCACCGCCCCGACCTCCTCGCCACCTCCTCCGACTTCCTCCGCGTCTGGCGCATTTCCGACACCGACACTGAATCCTCCTCCCGCGTCGAGCTCAAATCCCTCCTCAACGGCAACAAAAACAGCGAGTTCTGCGGGCCCCTCACCTCCTTCGACTGGAACGAAGCCGAGCCGCGCCGCATCGGCACCTCCAGCATCGACACCACCTGCACCATTTGGGACATCGAGAAAGAAACCGTTGATACTCAGTTAATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGCGGCGTCGGAGTCTTCGCCTCCGTCTCCGCCGACGGCTCCGTTAGGGTTTTCGATCTCCGCGACAAGGAGCACTCCACTATCATCTACGAGAGCTCCGAACCGGACACGCCTCTGGTGCGGCTCGGGTGGAACAAGCAGGACCCGAGGTACATGGCCACGATCATCATGGACAGCGCCAAGGTCGTGGTGCTGGATATCCGCTTCCCCACGCTCCCTGTGGTGGAGCTGCAGCGGCACCAGGCCAGTGTGAACGCGATTGCGTGGGCCCCGCATAGCTCGTGCCATATATGCACCGCCGGGGATGATTCCCAGGCGCTGATTTGGGATTTGTCAGTCCATGGGTCAACCCGTGGAGGGTGGCCTTGA 939 0.623 MGASSDPTQDGSDEQQKRSEIYTYEAPWHIYAMNWSVRRDKKYRLAIASLLEQYPNRVEIVQLDDSNGEIRSDPSLSFEHPYPPTKAIFIPDKDCHRPDLLATSSDFLRVWRISDTDTESSSRVELKSLLNGNKNSEFCGPLTSFDWNEAEPRRIGTSSIDTTCTIWDIEKETVDTQLIAHDKEVYDIAWGGVGVFASVSADGSVRVFDLRDKEHSTIIYESSEPDTPLVRLGWNKQDPRYMATIIMDSAKVVVLDIRFPTLPVVELQRHQASVNAIAWAPHSSCHICTAGDDSQALIWDLSVHGSTRGGWP 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02061 312 FunFam WD repeat-containing protein LWD1 17 311 - -
Pumo5g02061 312 ProSiteProfiles Trp-Asp (WD) repeats profile. 267 302 IPR001680 GO:0005515
Pumo5g02061 312 Gene3D - 10 309 IPR015943 GO:0005515
Pumo5g02061 312 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 267 302 - -
Pumo5g02061 312 PANTHER WD REPEAT CONTAINING PROTEIN 12 303 IPR045159 -
Pumo5g02061 312 SMART WD40_4 171 209 IPR001680 GO:0005515
Pumo5g02061 312 SMART WD40_4 123 168 IPR001680 GO:0005515
Pumo5g02061 312 SMART WD40_4 260 300 IPR001680 GO:0005515
Pumo5g02061 312 SMART WD40_4 71 112 IPR001680 GO:0005515
Pumo5g02061 312 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Pumo5g02061 312 Pfam WD domain, G-beta repeat 267 300 IPR001680 GO:0005515
Pumo5g02061 312 Pfam WD domain, G-beta repeat 178 209 IPR001680 GO:0005515
Pumo5g02061 312 SUPERFAMILY WD40 repeat-like 46 302 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02061 Pumo-Chr5 56885582 56888599 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02061 K11805 - gmx:100818850 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02061 5 56885582 56888599 Pumo5g02061 5 56885582 56888599 ECH