Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02024 ATGGCTTCTACTTCAGAATCACAGTCTCAACCGCTTAAAGACCGAGTTGCAATCATCACTGGCTCGTCCCGCGGAATCGGTCGAGAAATCGCGCTTCACCTCGCTTCACTCGGAGCGCGAATCGTCGTCAACTACACCTCCAACTCGGCCCAAGCCGACTCAGTCGCAGCCCAAATCAACGCCAACTCTGCCACGCCGCGCGCCGTGGCAGTCCAAGCCGACGTGTCCGATCCAGTCCAGGTCAAGTCGCTGTTCGACTCAGCCGAACTCGCTTTCGACTCGCCGGTCCACATCCTGGTCAACTCGGCCGGCGTCACCGACGACACTTACTCCACCGTGGCCAACGCCACCGTGGAGACCTTCGACCGCATCTTCGCGGTTAACGCTCGGGGCGCCTTCGCGTGCGCCAGGGAGGCGGCGAACCGACTGAGGCGCGGCGGCGGAGGGCGGATAATTCTGGTGTCGACGTCGCTGGTGGCGGCGCTAAGGCCCGGGTACGGGGCGTACACGGCGTCGAAGGCGGCGGTGGAGGCGATGACGAAGATTCTGGCGAAGGAGTTGAAGGGGACAAAGATAACGGCGAACTGCGTGGCGCCGGGACCGATCGCGACGGAGCTGTTCTTCGAGGGGAAGACGGAGGAGATAGTGAATAGGATGGTGCAAGAGATTCCGCTGGGGAGGCTCGGTGAGACCAAAGACGTGGCACCTGTTGTGGGATTCTTGGCCACTGATGCTGCCGAATGGGTCAACGGTCAAATCATTCGTGTCAACGGTGGTTTTGTTTAG 786 0.6107 MASTSESQSQPLKDRVAIITGSSRGIGREIALHLASLGARIVVNYTSNSAQADSVAAQINANSATPRAVAVQADVSDPVQVKSLFDSAELAFDSPVHILVNSAGVTDDTYSTVANATVETFDRIFAVNARGAFACAREAANRLRRGGGGRIILVSTSLVAALRPGYGAYTASKAAVEAMTKILAKELKGTKITANCVAPGPIATELFFEGKTEEIVNRMVQEIPLGRLGETKDVAPVVGFLATDAAEWVNGQIIRVNGGFV 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02024 261 SMART This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 15 205 - -
Pumo5g02024 261 FunFam Short-chain dehydrogenase reductase 3 261 - -
Pumo5g02024 261 Pfam Enoyl-(Acyl carrier protein) reductase 21 260 - -
Pumo5g02024 261 PANTHER NADPH-DEPENDENT ALDEHYDE REDUCTASE-LIKE PROTEIN, CHLOROPLASTIC-RELATED 5 259 - -
Pumo5g02024 261 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 169 188 IPR002347 -
Pumo5g02024 261 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 94 105 IPR002347 -
Pumo5g02024 261 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 149 157 IPR002347 -
Pumo5g02024 261 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 260 IPR036291 -
Pumo5g02024 261 Gene3D - 2 261 - -
Pumo5g02024 261 PRINTS Glucose/ribitol dehydrogenase family signature 143 159 IPR002347 -
Pumo5g02024 261 PRINTS Glucose/ribitol dehydrogenase family signature 224 244 IPR002347 -
Pumo5g02024 261 PRINTS Glucose/ribitol dehydrogenase family signature 169 188 IPR002347 -
Pumo5g02024 261 PRINTS Glucose/ribitol dehydrogenase family signature 94 105 IPR002347 -
Pumo5g02024 261 PRINTS Glucose/ribitol dehydrogenase family signature 16 33 IPR002347 -
Pumo5g02024 261 PRINTS Glucose/ribitol dehydrogenase family signature 190 207 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02024 Pumo-Chr5 55953312 55954348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02024 10 260 Acyl Lipid Metabolism Gene Families AT1G24360 32.937 7.18e-35 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02024 K00059 - gmx:100809416 414.461
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02024 5 55953312 55954348 Pumo5g02024 5 55953312 55954348 ECH