Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02014 ATGAGACCCCCGAGAGGCGGCGGACGTGGCGGCGGTTTCAGAGGCGGCCGCGACGGTGGCTTTGGTCGCGGCAGAGGTGGCTTTGGTCGCGGCGGTGGAGGACGCGGTGGTGGCGGATTTCGCGACGAAGGTCCACCCTCCGAAGTCGTAGAGGTGTCAACGTTTATGCATGCATGTGAGGGAGATGCAGTGGCGAAGCTTACGAATGAGAAAGTTCCCTTTTTCAATGCTCCTATATATCTGAAAAACATGACTCAGATTGGGAAAGTTGATGAAATATTTGGCCCCATCAATGAAGCTTACTTCTCAATTAAAATGATGGAAGGGATTGTTGCTACCTCTTATTCATCGGGTGACAAGTTTTATATTGACCCAAGGAAACTGTTGCCTCTTGCAAGATTTCTTCCACAACCCAAGGGACAATCACAAGCTGCTAGAGGTGGAGGTGGAGGAGGTCGTGGTGGAGGCAGAGGTTTTCGTGGAGGTGGTGGTTTTCGTGGAAGGGGCGGCCCAAGGGGTGGGAGAGGTGGTCCTCCTAGGGGCGGTGGACGGGGTGGTGGTTTCAGGGGAAGAGGGAGATCATAG 585 0.5402 MRPPRGGGRGGGFRGGRDGGFGRGRGGFGRGGGGRGGGGFRDEGPPSEVVEVSTFMHACEGDAVAKLTNEKVPFFNAPIYLKNMTQIGKVDEIFGPINEAYFSIKMMEGIVATSYSSGDKFYIDPRKLLPLARFLPQPKGQSQAARGGGGGGRGGGRGFRGGGGFRGRGGPRGGRGGPPRGGGRGGGFRGRGRS 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02014 194 MobiDBLite consensus disorder prediction 1 47 - -
Pumo5g02014 194 Pfam Gar1/Naf1 RNA binding region 49 135 IPR007504 GO:0001522|GO:0042254
Pumo5g02014 194 SUPERFAMILY Translation proteins 50 124 IPR009000 -
Pumo5g02014 194 FunFam H/ACA ribonucleoprotein complex subunit 45 136 - -
Pumo5g02014 194 PANTHER NUCLEOLAR PROTEIN FAMILY A MEMBER 1 SNORNP PROTEIN GAR1 9 191 - -
Pumo5g02014 194 MobiDBLite consensus disorder prediction 137 194 - -
Pumo5g02014 194 Gene3D Probable tRNA pseudouridine synthase domain 45 136 IPR038664 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02014 Pumo-Chr5 55838277 55840690 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02014 K11128 - gmx:100788981 215.698
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02014 5 55838277 55840690 Pumo5g02014 5 55838277 55840690 ECH