Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01966 ATGGATCTGGAGGGAATGGCTAAAATCTCCATCTTGTTGATGGGGCTTTGGCTACTAGTTAACTGGGCAGGGTTGTTGGATGTAAAATACATGAAGTACAAGGACCCTAAACATTCAATTGATACTCGGGTTGAGGATCTTGTTAGCAGGATGACTCTTGAGGAAAAAATTGGACAAATGTTGCAGGTTGAGCGCAAGTATGCATCTGCTGATTTGCTTAAGAAGTATTTTATTGGGAGTGTAATGAGTGAGGGAGGGAGTATTCCGGCTCCACAGGCTTCTGCTGAAACCTGGATTGACATGGTGAATGAATTTCAGAAGGGTGCTTTATCAACCCGGCTTGGAATTCCAATGTTTTATGGGATTGATGCTGTTCATGGCCACAACACTGTTCACAATGCAACTATTTTTCCTCACAATATTGGTCTTGGAGCTACCAGGGACCCTGAACTAGTTAAGAGAATTGGAGCTGCAACTGCCCTTGAAGTTAGAGCAACAGGAATTCAATATGCTTATGCACCTTGTATAGCAGTCTGTAGAGATCCAAGATGGGGTCGGTGTTATGAAAGCTACAGTGAAGATCCTGAACTAGTTCAAGCTATGACTGAAATCATACCAGGATTGCAAGGGGACATCCCTCATAATTTACCAAAGGGTGTCCCTTTTATCACTGGAAAAGAAAAAGTTATAGGTTGTGCTAAGCACTATGTGGGTGATGGTGGAACAATCAATGGGATTGATGAGCACAACACTGTTATAGATAGAGATGAATTGATGAAAATTCACATGCCAGGCTACCTCAGCTCAATCAGCAAGGGTGTGGCAACCATTATGGTCTCTTACTCCAGTTGGAATGGAGTAAAAATGCATGCTCACCATGATCTTCTTACTGGCTACCTCAAGAATACTCTCCATTTCAAGGGCTTTGTCATTTCAGATTTTGAGGGTCTTGATAGGATCACCTCTCCACCTCGTGCAAACATCACTTATTCAATTGAAGCAGGAGTTTCTGCAGGCATTGACATGTTCATGGTTCCAAAGCATTACACAGAATTCATAGATGTTCTAACCATGTCGGTGGAAAATAAGTACATTCCCATGAGTCGAATTGATGATGCGGTGAGAAGAATTTTGTGGGTTAAGTTCATGATGGGTATTTTTGAGAACCCTTTTGCTGATTACAGTTTGGCCAAATATTTGGGAATCCAGGAACACAGAAATTTGGCTAGGGAAGCAGTAAGGAAATCAATGGTCCTTCTGAAAAATGGTGAATCTGCTGACAAGCCTTTGTTGCCTCTTCCTAAAAAGGTGCCAAAAATACTTGTGGCTGGAAGCCATGCTGATAATCTAGGATATCAGTGTGGTGGCTGGACCATACAATGGCAAGGAGTCAGTGGGAACAATCTTCTCAAAGGGACCACAATTCTCACTGCTGTGAAAAACACTGTTGATCCTGAAACCACAGTGGTCTACAAGGAGAACCCTGATGTAGAATTTGTTAAATCCAATGAATTTTCCTATGCAATAGTTGTAGTAGGGGAGCACCCTTATGCTGAAATGTATGGTGACAGCATGAACTTGACAATCCCAGAACCTGGTCCTGAGATCATAACAAATGTCTGTGGAGCAATAAAATGTGTGGTTATCATTATTTCTGGTCGTCCTGTAGTTATTGAACCATATATTGGTTTAATAGATGCACTTGTTGCTGCATGGCTCCCAGGTAGCGAAGGCCAAGGTGTGGCTGATGTTTTATTTGGTGACTATGGTTTCACAGGAAAGCTTCCAAGGACATGGTTCAAAACTGTTGATCAACTGCCAATGAATGTTGGAGATCCTCACTATGATCCCCTCTTCCCATTTGGGTTTGGCCTTTCTACCAAACCTTCTGTAGCCCTTTATTCCTCGTAG 1911 0.4233 MDLEGMAKISILLMGLWLLVNWAGLLDVKYMKYKDPKHSIDTRVEDLVSRMTLEEKIGQMLQVERKYASADLLKKYFIGSVMSEGGSIPAPQASAETWIDMVNEFQKGALSTRLGIPMFYGIDAVHGHNTVHNATIFPHNIGLGATRDPELVKRIGAATALEVRATGIQYAYAPCIAVCRDPRWGRCYESYSEDPELVQAMTEIIPGLQGDIPHNLPKGVPFITGKEKVIGCAKHYVGDGGTINGIDEHNTVIDRDELMKIHMPGYLSSISKGVATIMVSYSSWNGVKMHAHHDLLTGYLKNTLHFKGFVISDFEGLDRITSPPRANITYSIEAGVSAGIDMFMVPKHYTEFIDVLTMSVENKYIPMSRIDDAVRRILWVKFMMGIFENPFADYSLAKYLGIQEHRNLAREAVRKSMVLLKNGESADKPLLPLPKKVPKILVAGSHADNLGYQCGGWTIQWQGVSGNNLLKGTTILTAVKNTVDPETTVVYKENPDVEFVKSNEFSYAIVVVGEHPYAEMYGDSMNLTIPEPGPEIITNVCGAIKCVVIIISGRPVVIEPYIGLIDALVAAWLPGSEGQGVADVLFGDYGFTGKLPRTWFKTVDQLPMNVGDPHYDPLFPFGFGLSTKPSVALYSS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01966 636 FunFam Glycosyl hydrolase family protein 402 628 - -
Pumo5g01966 636 Pfam Glycosyl hydrolase family 3 N terminal domain 52 378 IPR001764 GO:0004553|GO:0005975
Pumo5g01966 636 PANTHER PERIPLASMIC BETA-GLUCOSIDASE-RELATED 29 632 - -
Pumo5g01966 636 PRINTS Glycosyl hydrolase family 3 signature 137 156 IPR001764 GO:0004553|GO:0005975
Pumo5g01966 636 PRINTS Glycosyl hydrolase family 3 signature 113 129 IPR001764 GO:0004553|GO:0005975
Pumo5g01966 636 PRINTS Glycosyl hydrolase family 3 signature 183 199 IPR001764 GO:0004553|GO:0005975
Pumo5g01966 636 PRINTS Glycosyl hydrolase family 3 signature 299 317 IPR001764 GO:0004553|GO:0005975
Pumo5g01966 636 PRINTS Glycosyl hydrolase family 3 signature 229 245 IPR001764 GO:0004553|GO:0005975
Pumo5g01966 636 SUPERFAMILY Beta-D-glucan exohydrolase, C-terminal domain 417 626 IPR036881 GO:0004553|GO:0005975
Pumo5g01966 636 Pfam Glycosyl hydrolase family 3 C-terminal domain 417 626 IPR002772 GO:0004553|GO:0005975
Pumo5g01966 636 SUPERFAMILY (Trans)glycosidases 30 416 IPR017853 -
Pumo5g01966 636 Gene3D - 402 628 IPR036881 GO:0004553|GO:0005975
Pumo5g01966 636 FunFam Beta-D-glucan exohydrolase isoenzyme ExoI 26 401 - -
Pumo5g01966 636 Gene3D - 27 401 IPR036962 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01966 Pumo-Chr5 55189712 55193840 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01966 31 629 Glycoside Hydrolase AT5G20950 71.619 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01966 K05349 - gmx:100816705 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01966 5 55189712 55193840 Pumo5g01966 5 55189712 55193840 ECH