Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01964 ATGGAAGTAGCTCTTTCCCCTCAAGTACAAAAGCCGCATTTGCAGACAACAGGTCGCAAAATTTTATGTGCTGGATCTCAGAAGGATCTGTGGCTTGTTGTGCGAGAAGGATCTCTAAGTGATGTAGAGTTGGCCTTGGCATCATTGAAGAAGAGTGGGGGCAATATCAATTTGAGGAACACCTTTGGGCTGACTCCTCTTCATATTGCAACTTGGAGAAACCACATTCCCATTGTAAGGAGGCTTCTTGCGGCTGGTGCAGATCCTGATGCCCGAGATGGAGAGTCAGGATGGAGTAGCCTTCACAGGGCTCTGCATTTTGGTCATCTTGCCGCGGCAAGCATTCTTCTTCAGCATGGTGCCTCTATTACATTGGAGGACTCTAAATCTCGAATACCCGTAGATCTCTTATCTGGCTCTGTATTTCAGGTTCTTGGAAATGAACACAGTTCAGTGGCTACTGAGGTCTTTAGTTGGGGCAGTGGTGCAAATTATCAGCTTGGAACTGGAAATGCGCATATTCAGAAGTTACCATGCAAAGTTGATTCACTCGGTGGTTCATTCATAAAGCTAATTTCTGCCGGGAAATTCCATAGTGTGGCACTTACTGCACGCGGAGAAGTGTATACTTGGGGATTTGGAAGGGGTGGCCGTCTAGGGCATCCTGATTTTGATATACACAGTGGTCAAGCTGCTGTCATCACTCCCCGCCAGGTGACTTCTGGTCTGGGTTCCCGCAGAGTGATGGCAATTGCTGCAGCTAAGCATCATACGGTTATTGCTACCCAGGGTGGGGAAGTGTTCACTTGGGGATCCAATAGAGAGGGACAGCTTGGGTACCCTTCTGTTGATACACAACCTACACCTCGTAGAGTATCTTCTTTGAGGTCAAAAATTGTTGCTGTTGCTGCAGCAAACAAACACACAGCTGTAGTTTCTGATTTAGGTGAAGTTTATACTTGGGGTTGCAACAGGGAGGGTCAGCTTGGTTATGGCACCTCAAACTCAGCATCTAATTACACCCCACATGTGGTTGAATCCTTGAAGGGAAAGACTTTGACCAGAGTTTCTGCTGCAAAATATCACACAATTGTATTAGGATCTGATGGAGAGGTATTTACCTGGGGTCATCGACTTGTTACTCCAAAACGTGTAGTAGTTAGTAGGAACTTAAAGAAAAGTGGAAGCACTCCGTTAAAATTTCACCGCAAGGAACGGCTTAATGTGGTTTCTATAGCTGCTGGAATGGTACACAGCATGGCTCTTACAGATGATGGTGCATTATTTTATTGGGTCTCCTCAGATCCTGATCTTAGATGCCAACAGTTATATGCTATGTGTGGAAGGAATATGGTGAGCATATCAGCTGGAAAGTACTGGACTGCAGCAGTTACAGCTACAGGTGATATTTACATGTGGGATGGGAAGAAAGGTAAGGATAAGCCCCTTGTTGCAACTCGGTTGCATGGTGTAAAGAAGGCTACATCAGTTTCAGTTGGTGAAACACATTTACTAATTGTGGCTTCACTGTATCATCCTGTCTACCCTCCTAACATGATTGAGAATCCTCAGAAACTCAAGTTGAATAACAAGGATGATATGGAAGAGTTAAATGAAGACATTTTATTTGAAGATATGGATTCCGGTAACATAATATCTAGTGTACAAAATGATACTTTCAAGCAGAGATCTATACCTAGCTTAAAAAGCCATTGTGAAAAAGTAGCTTCTGAGTGTCTAGTGGAGCCACGGAATGCTGTCCAACTGCTTGAGATTGCTGATTCTCTTGGAGCAGATGATTTGAAGAAATATTGTGAGGAGATTGTCATGCGCAACCTTGATTATATATTTGCAGTTTCGTCACATACTGTAGCAAGTGCCTCACCAGATATTCTGGCTAACCTTGAGAGGTTGTTAGACCAGAGATCATCTGAGCCATGGAGTCACCGTCGGCTCCCTACTCCAACTGCTACTTTCCCTGCCATCATTAACAGTGAAGAGGATGATAGTGAGATAGAGTTTCAAAGGACTCGTGACAAACCCATGAAAATGTCTGCAATGAAATTGGAGAAAGACCAAAGACTAGATTCCTTCCTACAGCCCAAGGACGATCCTAATAAAGAAATCTCCAAAGTAGTCCGAGCTATAAGGAAGAAGTTGCAGCAGATTGAGATGCTTGAAGATAAGCAGTCTAATGGACATCTTCTTGATGACCAGCAGATTGCAAAGCTTCAATTGAAGTCAGCACTTGAGAGCTCACTTGCAGAGCTAGGTATTCCTGTTGAGACATCACAGAATAAAGAATCATCTTCTATGTTACCTGAAGGGAAAGGTAGTAAGAAGGGTAAACTATCAAAAAAACAAAGGAGAAAGAGTGGCAAATTAAACATAGAGCAGACAGAAATAGAATCTGTTTACTCTAAAAGTGAAGCCATTCCCAAATCCGAAGACCTGTTGGACATTGACATCATGGGGATTCCTGATTCAAAGGTGGAAGAGGATGCTGTATGTGAACAGATCACAGCTGACCAAGGAGCAAAAGAGTTGGCTTTTGTAGTGCAAAAGAAAGATGCTTTAGAGTTGCTGAAAGCCAAGGGTCCGTCACCAAAGGCTTCAAAGAAGAAGAGCAAGAAGGGTGGGCTTTCTATGTTTCTGAGTGGTGCTCTTGATGAAGCCCCGAAAGAGGTGGCTCCCCCTCCTCCACCAACACCCAAAAATGATGGTCCTGCATGGGGTGGGGCCAAGTTCACGAAGGGTTCTGCTTCTCTTCGTGAAATCCAGGATGAACAAAGTAAAATAAAGGTGAACAAACCGGCCGGGAGCAAAGATAAGATGGAAGATCTTTCCGATTTAGGCAGTGGGGGCAAAATAAAGTTGAGTTCATTTCTCCCTTCCAGCCCAATACCTGTTACCCCAACTCGTAGTTCCCAGGTATCTGATGGAGAAATAAGCACCCCTCCTTGGGCTGCTTCAGGAACCCCTCCCCAACCATCTCGGCCATCGTTAAGGGACATCCAAATGCAACAGGGAAAGAAACACCAAGGCCTTTCACATAGTCCAAAGACTAGAACAGCTGGATTTTCCATCCCTACCGGTCAAGGCTCGCCGTCTGAAACAACCGGAGTGAGTCGCTGGTTCAAGCCTGAGGTAGAAACACCATCCTCAATTCGTTCTATTCAAATTGAGGAAAAGGCTATGAAAGATCTCAAGCGCTTCTATAGCAGTGTTAAGATTGTCAGAAAGCAATCTTGA 3252 0.4446 MEVALSPQVQKPHLQTTGRKILCAGSQKDLWLVVREGSLSDVELALASLKKSGGNINLRNTFGLTPLHIATWRNHIPIVRRLLAAGADPDARDGESGWSSLHRALHFGHLAAASILLQHGASITLEDSKSRIPVDLLSGSVFQVLGNEHSSVATEVFSWGSGANYQLGTGNAHIQKLPCKVDSLGGSFIKLISAGKFHSVALTARGEVYTWGFGRGGRLGHPDFDIHSGQAAVITPRQVTSGLGSRRVMAIAAAKHHTVIATQGGEVFTWGSNREGQLGYPSVDTQPTPRRVSSLRSKIVAVAAANKHTAVVSDLGEVYTWGCNREGQLGYGTSNSASNYTPHVVESLKGKTLTRVSAAKYHTIVLGSDGEVFTWGHRLVTPKRVVVSRNLKKSGSTPLKFHRKERLNVVSIAAGMVHSMALTDDGALFYWVSSDPDLRCQQLYAMCGRNMVSISAGKYWTAAVTATGDIYMWDGKKGKDKPLVATRLHGVKKATSVSVGETHLLIVASLYHPVYPPNMIENPQKLKLNNKDDMEELNEDILFEDMDSGNIISSVQNDTFKQRSIPSLKSHCEKVASECLVEPRNAVQLLEIADSLGADDLKKYCEEIVMRNLDYIFAVSSHTVASASPDILANLERLLDQRSSEPWSHRRLPTPTATFPAIINSEEDDSEIEFQRTRDKPMKMSAMKLEKDQRLDSFLQPKDDPNKEISKVVRAIRKKLQQIEMLEDKQSNGHLLDDQQIAKLQLKSALESSLAELGIPVETSQNKESSSMLPEGKGSKKGKLSKKQRRKSGKLNIEQTEIESVYSKSEAIPKSEDLLDIDIMGIPDSKVEEDAVCEQITADQGAKELAFVVQKKDALELLKAKGPSPKASKKKSKKGGLSMFLSGALDEAPKEVAPPPPPTPKNDGPAWGGAKFTKGSASLREIQDEQSKIKVNKPAGSKDKMEDLSDLGSGGKIKLSSFLPSSPIPVTPTRSSQVSDGEISTPPWAASGTPPQPSRPSLRDIQMQQGKKHQGLSHSPKTRTAGFSIPTGQGSPSETTGVSRWFKPEVETPSSIRSIQIEEKAMKDLKRFYSSVKIVRKQS 1083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01964 1083 Pfam Ankyrin repeats (3 copies) 36 127 IPR002110 GO:0005515
Pumo5g01964 1083 SMART ANK_2a 96 125 IPR002110 GO:0005515
Pumo5g01964 1083 SMART ANK_2a 62 91 IPR002110 GO:0005515
Pumo5g01964 1083 MobiDBLite consensus disorder prediction 995 1042 - -
Pumo5g01964 1083 ProSiteProfiles Ankyrin repeat region circular profile. 62 93 - -
Pumo5g01964 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 206 264 IPR000408 -
Pumo5g01964 1083 ProSiteProfiles Ankyrin repeat profile. 96 128 IPR002110 GO:0005515
Pumo5g01964 1083 MobiDBLite consensus disorder prediction 761 796 - -
Pumo5g01964 1083 SUPERFAMILY RCC1/BLIP-II 119 431 IPR009091 -
Pumo5g01964 1083 ProSiteProfiles Ankyrin repeat profile. 62 94 IPR002110 GO:0005515
Pumo5g01964 1083 Gene3D - 390 510 IPR009091 -
Pumo5g01964 1083 Gene3D - 128 389 IPR009091 -
Pumo5g01964 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 369 IPR000408 -
Pumo5g01964 1083 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 192 202 IPR000408 -
Pumo5g01964 1083 MobiDBLite consensus disorder prediction 863 1044 - -
Pumo5g01964 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 316 366 IPR000408 -
Pumo5g01964 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 206 260 IPR000408 -
Pumo5g01964 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 155 202 IPR000408 -
Pumo5g01964 1083 Pfam Regulator of chromosome condensation (RCC1) repeat 265 312 IPR000408 -
Pumo5g01964 1083 SUPERFAMILY Ankyrin repeat 33 136 IPR036770 -
Pumo5g01964 1083 Coils Coil 709 729 - -
Pumo5g01964 1083 Gene3D - 25 127 IPR036770 -
Pumo5g01964 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 154 205 IPR000408 -
Pumo5g01964 1083 SUPERFAMILY RCC1/BLIP-II 407 507 IPR009091 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 318 332 IPR000408 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 208 224 IPR000408 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 155 171 IPR000408 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 265 281 IPR000408 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 189 202 IPR000408 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 302 318 IPR000408 -
Pumo5g01964 1083 PRINTS Chromosome condensation regulator RCC1 signature 415 433 IPR000408 -
Pumo5g01964 1083 MobiDBLite consensus disorder prediction 925 951 - -
Pumo5g01964 1083 PANTHER BTK-BINDING PROTEIN-RELATED 26 1074 - -
Pumo5g01964 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 265 315 IPR000408 -
Pumo5g01964 1083 ProSiteProfiles Ankyrin repeat region circular profile. 96 127 - -
Pumo5g01964 1083 MobiDBLite consensus disorder prediction 964 986 - -
Pumo5g01964 1083 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 370 425 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01964 Pumo-Chr5 55140056 55150557 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01964 35 136 Acyl Lipid Metabolism Gene Families AT5G53470 34.314 5.24e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01964 K24810 - gmx:100800604 1946.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g01964 5 55140056 55150557 Pumo5g01964 5 55140056 55150557 ECH