Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01963 ATGCAGGTAACTGAGACGAAGACTGTTCAAGTCAAGCAGCTTTCAGATCTAGCTGGTGAGAGAGAGATTCACGAGTTCTTCTCCTTTTCTGGAGAAATCGAGCATGTTGAGATCCTGAGTGAAGATGGGAAATCAAAGACTGCATATGTGACATTTAAAGATCCCAAAGCACTTGAAATTGCATTATTGTTATCGGGAGCAACAATAGTAGACCAGGTTGTGAGGATAACTCCAGCTGAGAACTATGTACCAAATCGTGAGATGCAGGAAGTAAGGGTGGTGGAAAATGCTATAAATGTTGCTCCTTCTGAGAATTCTGAGAATGTCTCCTCAAATATTGAGGAGGGGAAAGCCAGCCCCACCAATAGAAGAATCTACCTTAGTAAAGCACAAGATGCAGTTACAAGTATGCTGGCGAAAGGTTCAGCAATAAGACAAGATGCGGTGAACAAAGCTAAAGCATTTGATGAAAAGCATCAGTTGACTGCCAATGCATCTGCAAAGGTCATTTCTTTTGACAAGAGAGTTGGTCTGACAGAGAAATTGACAGTAGGCATTGCTGCAGTGAATCAGAAAGTCAAGTCTGTGGATCAGAGACTTCATGTTTCAGATAAAACAATGGCAGCAATAGTTGCAGCTGAGAGGAAGATAAATGACACTGGCTCAGCTGTCAAAACAAGCAGATATGTGACTGCTGGAACAGCATGGTTAAACGGTGCTTTTAGCAAGGTGGCAAAGGCTGGAAACGTTGCAAGTTCTAAAACTAGAGAAAAATTTCATATGGCTGTTTCAAACTTGACAGCAAAGGAACCGTCAGTGGCTGCTGCATAG 831 0.4236 MQVTETKTVQVKQLSDLAGEREIHEFFSFSGEIEHVEILSEDGKSKTAYVTFKDPKALEIALLLSGATIVDQVVRITPAENYVPNREMQEVRVVENAINVAPSENSENVSSNIEEGKASPTNRRIYLSKAQDAVTSMLAKGSAIRQDAVNKAKAFDEKHQLTANASAKVISFDKRVGLTEKLTVGIAAVNQKVKSVDQRLHVSDKTMAAIVAAERKINDTGSAVKTSRYVTAGTAWLNGAFSKVAKAGNVASSKTREKFHMAVSNLTAKEPSVAAA 276
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01963 276 Gene3D - 2 92 IPR012677 -
Pumo5g01963 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 72 IPR000504 GO:0003723
Pumo5g01963 276 SMART rrm1_1 8 77 IPR000504 GO:0003723
Pumo5g01963 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 81 IPR000504 GO:0003723
Pumo5g01963 276 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 6 261 - -
Pumo5g01963 276 SUPERFAMILY RNA-binding domain, RBD 4 88 IPR035979 GO:0003676
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Pumo5g01963 Pumo-Chr5 55115844 55120052 Transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01963 - - gmx:100812446 488.419