Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g01956 ATGGACAGGCTCATAAAAGTAGACCCAACAAACACGGTCTCGATAAGGATCGAGCCAGGCCAAAAATGCCACGGCCAAATCACGTTACGCAACGTTATGTACACCATGCCAGTGGCGTTCAGGCTTCAACCGTTGATCAAAACGCGTTACACGGTGAAGCCTCAATCGGGTATCATATCTCCGTTGGCCACAGTAACAATAGAAATCCTCTACAACCTTCCACAGGGTTCTACGCTACCGCACTCTTTCCCTCACTCCGAAGACTCGTTCCTTCTCCACAGTGTCGTGGTTCCCGGCGCCACCGTCAAAGAACTTTCCTCCATGTTCGAATCTGTACCTTCCGATTGGTTTACTGCGAAGAAGAAACAAGTCTTCATCGACAGCGGAATCAAGATCATCTTCGTGGGCTCGTTAGTCCTGGCCCAATTGGTCCAAGACGGGTCCATAGACGAAATCAGAGAAGTGCTGGAACACAGTGAGGCCTCGTGGAAAGCCGTTGACTGCGTTGACCCAAACGGAGACACGCTCCTCCACGTGGCGATTTCGAAAGGCAGACCCGACCTCGTCCAGCTCCTCCTCGAGTTCAACGCGGACGTGGAAGCGAAAAACCGTTCCGGCGCGACTCCGTTAGAAGCGGCGTGTTCCACCGGAGAAGAGTTAATCGTTGAGCTTTTGCTAGCTCACAAGGCAAATACAGAGAGAACGGAATCATCGTCGTTAGGAGCGATTCACCTGTCAGCGAGAGAAGGACACGTGGAGGTTTTGAGGTTGTTGTTACTGAAAGGAGCTAACGTTGACTCGTTGACCAAAGACGGTAACACCGCGTTGCACCTTGCCGTTAAAGAAGGTCAGAGAGAGTGCGCGAGGCTGTTACTCGCGAACAATGCGAGGACTGATATTCGCGAATCGCGAGAGGGTGACACGTGTCTGCACGTGGCAGCGGGTGTGGGAGACGAGAGCATGGTGAAGCTGTTGTTGAACAAAGGTGCTAATAAGGATGTGAGGAATTTTAACGGTAGGACTGCTTATGATGTGGCCGCGGAGAACGGTCACGCGCGCGTGTTCGACGCGCTGCGGCTGGGGGACGGGCTGTGCGTGGCGGCGAGGAAGGGGGAGGTGAGGAGCATTCAGAGGCTGATCGATAGCGGCGCGGCGGTGGACGGGAGGGACCAGCACGGGTGGACGGCGCTGCACAGGGCGTGTTTCAAGGGGCGCGTGGAGGCGGTTCGGGCGTTGTTGGAGAGAGGGATTGAGGCGGACGCGAGGGACGAGGACGGGTACACGGCGTTGCATTGCGCGGTGGAGGCGGGGCATGCTGACGTGGCGGAGGTGCTGGTGAAGAAGGGTGTGGACGTGGAGGCGAGGACTAATAAGGGCGTCACGGCTCTGCAGATAGCGGAGGCGTTGGGGTATGTGGGGATTGCGAGGGTGGTTGTTGAGAGCGTGGCGGAAGGGGAACAAGCTGTGGTTGGGGAGATGAAAAAGAAGAAGAAGATTGGAAGAAGAAGAAGAGAGAGGGAGATTCGGGGGAGCTTTGATCGGTCAATGGCTTTGGCTGTGCTCTAG 1566 0.5581 MDRLIKVDPTNTVSIRIEPGQKCHGQITLRNVMYTMPVAFRLQPLIKTRYTVKPQSGIISPLATVTIEILYNLPQGSTLPHSFPHSEDSFLLHSVVVPGATVKELSSMFESVPSDWFTAKKKQVFIDSGIKIIFVGSLVLAQLVQDGSIDEIREVLEHSEASWKAVDCVDPNGDTLLHVAISKGRPDLVQLLLEFNADVEAKNRSGATPLEAACSTGEELIVELLLAHKANTERTESSSLGAIHLSAREGHVEVLRLLLLKGANVDSLTKDGNTALHLAVKEGQRECARLLLANNARTDIRESREGDTCLHVAAGVGDESMVKLLLNKGANKDVRNFNGRTAYDVAAENGHARVFDALRLGDGLCVAARKGEVRSIQRLIDSGAAVDGRDQHGWTALHRACFKGRVEAVRALLERGIEADARDEDGYTALHCAVEAGHADVAEVLVKKGVDVEARTNKGVTALQIAEALGYVGIARVVVESVAEGEQAVVGEMKKKKKIGRRRREREIRGSFDRSMALAVL 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g01956 521 Gene3D Immunoglobulins 1 132 IPR013783 -
Pumo5g01956 521 Pfam MSP (Major sperm protein) domain 5 105 IPR000535 -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Pumo5g01956 521 PANTHER ROLLING PEBBLES, ISOFORM B 165 296 - -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Pumo5g01956 521 Gene3D - 310 359 IPR036770 -
Pumo5g01956 521 SMART ANK_2a 305 334 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 338 367 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 392 421 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 238 267 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 425 454 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 458 489 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 205 234 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 271 300 IPR002110 GO:0005515
Pumo5g01956 521 SMART ANK_2a 172 201 IPR002110 GO:0005515
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Pumo5g01956 521 SUPERFAMILY Ankyrin repeat 166 481 IPR036770 -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Pumo5g01956 521 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Pumo5g01956 521 Pfam Ankyrin repeats (3 copies) 164 233 IPR002110 GO:0005515
Pumo5g01956 521 Pfam Ankyrin repeats (3 copies) 364 455 IPR002110 GO:0005515
Pumo5g01956 521 Pfam Ankyrin repeats (3 copies) 242 299 IPR002110 GO:0005515
Pumo5g01956 521 Gene3D - 237 309 IPR036770 -
Pumo5g01956 521 Gene3D - 133 236 IPR036770 -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat region circular profile. 238 266 - -
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Pumo5g01956 521 SUPERFAMILY PapD-like 2 149 IPR008962 -
Pumo5g01956 521 Pfam Ankyrin repeats (many copies) 302 346 IPR002110 GO:0005515
Pumo5g01956 521 Gene3D - 361 508 IPR036770 -
Pumo5g01956 521 PRINTS Ankyrin repeat signature 272 287 IPR002110 GO:0005515
Pumo5g01956 521 PRINTS Ankyrin repeat signature 321 335 IPR002110 GO:0005515
Pumo5g01956 521 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g01956 Pumo-Chr5 54989207 54991106 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g01956 304 466 Miscellaneous Gene Families AT2G31820 33.333 1.64e-13 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g01956 - - gmx:100782232 893.649